Align Ethylmalonyl-CoA/methylmalonyl-CoA epimerase; EC 5.1.99.-; EC 5.1.99.1 (characterized)
to candidate CCNA_02011 CCNA_02011 methylmalonyl CoA epimerase
Query= SwissProt::Q3IZP4 (134 letters) >FitnessBrowser__Caulo:CCNA_02011 Length = 139 Score = 145 bits (365), Expect = 3e-40 Identities = 73/132 (55%), Positives = 91/132 (68%), Gaps = 3/132 (2%) Query: 1 MIGRLNHVAIAVPDLEAAAAQYRNTLGA-EVGAPQDEPDHGVTVIFITLPNTKIELLHPL 59 MIG+LNHV +A P ++ + YR+ LGA + P+ GV V F+ LPN++IEL+ P Sbjct: 1 MIGKLNHVGVATPSIDESVKMYRDLLGATSITDKWAMPEQGVWVCFVNLPNSQIELIEPY 60 Query: 60 GEGSPIAGFLEKNPAGGIHHICYEVEDILAARDRLKEAGARVLGSGEPKIGAHGKPVLFL 119 GE SPI GFL KNP GG HHIC+EVE+I ARD L GA VL GEP+IGAHG ++F+ Sbjct: 61 GEKSPIHGFLAKNPKGGQHHICFEVENIYEARDALVAKGATVL--GEPRIGAHGTLIIFV 118 Query: 120 HPKDFNGCLVEL 131 HPKD G LVEL Sbjct: 119 HPKDMGGMLVEL 130 Lambda K H 0.319 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 110 Number of extensions: 8 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 134 Length of database: 139 Length adjustment: 15 Effective length of query: 119 Effective length of database: 124 Effective search space: 14756 Effective search space used: 14756 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)
Align candidate CCNA_02011 CCNA_02011 (methylmalonyl CoA epimerase)
to HMM TIGR03081 (mce: methylmalonyl-CoA epimerase (EC 5.1.99.1))
../bin/blast/fastacmd -i /tmp/list.11258.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11258.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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