Align Aminomethyltransferase (EC 2.1.2.10) (characterized)
to candidate CCNA_03465 CCNA_03465 glycine cleavage system aminomethyltransferase T
Query= reanno::pseudo13_GW456_L13:PfGW456L13_1866 (374 letters) >FitnessBrowser__Caulo:CCNA_03465 Length = 375 Score = 369 bits (948), Expect = e-107 Identities = 200/372 (53%), Positives = 242/372 (65%), Gaps = 5/372 (1%) Query: 2 STEQLLKTPLHALHIELGARMVPFAGYDMPVQYPLGVMKEHQHTRDQAGLFDVSHMGQIR 61 S + L KTPL+ H+ GARMVPFAGY MPVQY GV+KEH TR+ AGLFDVSHMGQ R Sbjct: 7 SDQDLKKTPLYDAHVAAGARMVPFAGYSMPVQYKDGVLKEHLWTREHAGLFDVSHMGQAR 66 Query: 62 LTGANAAKALETLVPVDIIDLPVGMQRYAMFTNATGGILDDLMVANLGNDELFLVVNAAC 121 + G N AK+ E +V D L G QRY + NA GGI+DDLM A D LF+VVN AC Sbjct: 67 IRGENPAKSFEKVVSADYQGLKAGKQRYGVLLNADGGIVDDLMTARPDEDGLFVVVNGAC 126 Query: 122 KDQDLAHLRKHIGDQCTIEPLFEERALLALQGPAAVTVLARLAPEVAKMTFMQFARVKLL 181 KD D A + + + + T+ L E+RALLALQGP A VLA PE A+M FM + Sbjct: 127 KDNDYAIIARELAGEATVTRL-EDRALLALQGPEAAAVLAAHVPEAAQMVFMDAKALSAF 185 Query: 182 GVDCFVSRSGYTGEDGFEISVPATNAEALARALLAEAEVAAIGLGARDSLRLEAGLCLYG 241 GVD +SRSGYTGEDG+EISVPA AE + LLA+ V IGLGARDSLRLEAGL LYG Sbjct: 186 GVDAIISRSGYTGEDGYEISVPADAAERVWNTLLADERVKPIGLGARDSLRLEAGLPLYG 245 Query: 242 HDMNTDTTPIEASLLWAISKPRRADGARAGGFPGAETVFAQQQAGVSRKRVGLLPQERTP 301 HD++ +PIEA L +A+ + RR AG + GA + + +SR RV L E P Sbjct: 246 HDLDETVSPIEAGLNFAVGRSRR----EAGDYLGAARIAKELAGELSRVRVNLKVLEGAP 301 Query: 302 VREGAEIVNEAGDIIGSVCSGGFGPTLGGPLAMGYVDSAYIALDTPVWAIVRGKKVPLLV 361 REGAEI +EAG++IG V SGGF P+LG P+A+G+ AY A+ T + IVRGK V Sbjct: 302 AREGAEIADEAGNVIGKVTSGGFAPSLGFPIAIGFAPPAYAAVGTKLKVIVRGKPAAAEV 361 Query: 362 SKMPFVPQRYYR 373 PFVP RY R Sbjct: 362 VASPFVPNRYVR 373 Lambda K H 0.321 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 420 Number of extensions: 19 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 374 Length of database: 375 Length adjustment: 30 Effective length of query: 344 Effective length of database: 345 Effective search space: 118680 Effective search space used: 118680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate CCNA_03465 CCNA_03465 (glycine cleavage system aminomethyltransferase T)
to HMM TIGR00528 (gcvT: glycine cleavage system T protein (EC 2.1.2.10))
../bin/blast/fastacmd -i /tmp/list.1816.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1816.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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