Align Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) (characterized)
to candidate CCNA_02357 CCNA_02357 methylmalonic acid semialdehyde dehydrogenase
Query= reanno::Caulo:CCNA_01360 (500 letters) >FitnessBrowser__Caulo:CCNA_02357 Length = 498 Score = 765 bits (1976), Expect = 0.0 Identities = 376/499 (75%), Positives = 429/499 (85%), Gaps = 1/499 (0%) Query: 2 MRDIPHFIGGQKVDGASGRFGEVFDPNTGKVQARVALASAGELNTAIANAKVAQAAWAAT 61 MRDI HF+ GQ + GASGRFG+VF+PNTG+VQARV A+ EL+ A+ A AQ WA T Sbjct: 1 MRDIAHFVKGQTLVGASGRFGDVFNPNTGEVQARVQFATDAELDAAVQVAAKAQVGWAQT 60 Query: 62 NPQRRARVMFEFKRLLEVHMDELAALLSSEHGKVIADSKGDIQRGLEVIEFACGVPHLLK 121 NPQRRARVMFEFKRL+E M+ LA +LSSEHGKVIADSKGDIQRGLEVIEFACG+PH+LK Sbjct: 61 NPQRRARVMFEFKRLIERDMNTLAEILSSEHGKVIADSKGDIQRGLEVIEFACGIPHILK 120 Query: 122 GEYTQGAGPGIDVYSMRQPLGVVAGITPFNFPAMIPMWMFGPAIATGNAFILKPSERDPS 181 GEYT+GAGPGIDVYSMRQPLGV AGITPFNFPAMIPMWMFG +IA GN+FILKPSE+DP+ Sbjct: 121 GEYTEGAGPGIDVYSMRQPLGVCAGITPFNFPAMIPMWMFGISIAVGNSFILKPSEKDPT 180 Query: 182 VPVRLAELMIEAGLPPGVLNVVHGDKDCVEAILDHPDIKAVSFVGSSDIAQSVFQRAGAA 241 VPV+LAELM+EAG P GVLNVVHGDK V+AIL HP I+AVSFVGSSDIA V+Q A Sbjct: 181 VPVKLAELMMEAGAPAGVLNVVHGDKSAVDAILTHPLIRAVSFVGSSDIAHYVYQTGTAH 240 Query: 242 GKRVQAMGGAKNHGLVMPDADLDQAVADIIGAAYGSAGERCMALPVVVPVGEKTATALRE 301 GKRVQAMGGAKNHG+V+PDAD+DQ V D+ GAA+GSAGERCMALPVVVPVG+KTA LRE Sbjct: 241 GKRVQAMGGAKNHGIVLPDADMDQVVKDLSGAAFGSAGERCMALPVVVPVGQKTADELRE 300 Query: 302 KLVAAIGGLRVGVSTDPDAHYGPVVSAAHKARIESYIQMGVDEGAELVVDGRGFSLQGHE 361 ++VA I L+VGVSTDPDAHYGPVVSA H+ +I YI++G +EGAELVVDGR F LQG E Sbjct: 301 RMVAEIASLKVGVSTDPDAHYGPVVSAQHRDKIADYIRIGQEEGAELVVDGRDFQLQGFE 360 Query: 362 EGFFVGPTLFDHVKPTSRSYHDEIFGPVLQMVRAESLEEGIALASRHQYGNGVAIFTRNG 421 +GFF+GP+LFD VK ++YH+EIFGPVLQ+VRAE+LEE IAL S HQYGNGVAIFTRNG Sbjct: 361 KGFFIGPSLFDGVKKGMKTYHEEIFGPVLQIVRAETLEEAIALPSEHQYGNGVAIFTRNG 420 Query: 422 DAAREFADQVEVGMVGINVPIPVPVAYHSFGGWKRSGFGDLNQYGMDGVRFYTRTKTVTQ 481 AAREFA V VGMVGINVPIPVPVAYH+FGGWKRS FGD NQ+G++GV+FYT+ KTVT Sbjct: 421 RAAREFAANVNVGMVGINVPIPVPVAYHTFGGWKRSAFGDTNQHGVEGVKFYTKVKTVTA 480 Query: 482 RWPKGGAVLDQSFVIPTMR 500 RWP+ G V D SFVIPTM+ Sbjct: 481 RWPE-GEVADSSFVIPTMK 498 Lambda K H 0.320 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 913 Number of extensions: 35 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 500 Length of database: 498 Length adjustment: 34 Effective length of query: 466 Effective length of database: 464 Effective search space: 216224 Effective search space used: 216224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate CCNA_02357 CCNA_02357 (methylmalonic acid semialdehyde dehydrogenase)
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))
../bin/blast/fastacmd -i /tmp/list.23639.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23639.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.