Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate Echvi_2635 Echvi_2635 pyrroline-5-carboxylate reductase
Query= SwissProt::P22008 (273 letters) >FitnessBrowser__Cola:Echvi_2635 Length = 271 Score = 141 bits (355), Expect = 2e-38 Identities = 84/267 (31%), Positives = 139/267 (52%), Gaps = 2/267 (0%) Query: 5 RIAFIGAGNMAASLIGGL-RAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVAD 63 ++ IG GNM + + ++ + + D E+ ++ V E + V Sbjct: 2 KVLVIGGGNMGLTYAEAIANSKFLKDKDLMILDNSKEKTEELRKRSHFAVFEKLEDCVPA 61 Query: 64 ADVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNTP 123 ADV+ ++VKP A+ + + Q+ +S+ AG+ A+++ L + + VVR MPN P Sbjct: 62 ADVIFIAVKPYHANALMETMKDLTSEGQIFISLMAGVTIAAIQEGLNRKK-VVRAMPNLP 120 Query: 124 ALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLL 183 A + +G + A+ +VS + LL G ++ LD E IDA T +SGSGPAY F Sbjct: 121 AQVGKGLTSFTASDEVSRLELSTIENLLDTTGRSVRLDTENDIDASTGISGSGPAYIFYF 180 Query: 184 MQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKS 243 MQ+M +A K+G S+ + L QT GA ++ SS+++P RV S GTT AA+ S Sbjct: 181 MQSMLEAALKMGFSKHDSRVLVEQTFAGAVELFSSSDLDPEAWMNRVASKGGTTRAALDS 240 Query: 244 FQANGFEALVEQALNAASQRSAELAEQ 270 N + ++++A AA R+ EL ++ Sbjct: 241 MDDNNVKEMIKEAAYAAFNRAVELGKE 267 Lambda K H 0.315 0.127 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 126 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 271 Length adjustment: 25 Effective length of query: 248 Effective length of database: 246 Effective search space: 61008 Effective search space used: 61008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate Echvi_2635 Echvi_2635 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.16381.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16381.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.