GapMind for catabolism of small carbon sources

 

Alignments for a candidate for PRO3 in Echinicola vietnamensis KMM 6221, DSM 17526

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate Echvi_2635 Echvi_2635 pyrroline-5-carboxylate reductase

Query= SwissProt::P22008
         (273 letters)



>FitnessBrowser__Cola:Echvi_2635
          Length = 271

 Score =  141 bits (355), Expect = 2e-38
 Identities = 84/267 (31%), Positives = 139/267 (52%), Gaps = 2/267 (0%)

Query: 5   RIAFIGAGNMAASLIGGL-RAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVAD 63
           ++  IG GNM  +    +  ++ +    +   D   E+  ++       V E   + V  
Sbjct: 2   KVLVIGGGNMGLTYAEAIANSKFLKDKDLMILDNSKEKTEELRKRSHFAVFEKLEDCVPA 61

Query: 64  ADVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNTP 123
           ADV+ ++VKP    A+ + +       Q+ +S+ AG+  A+++  L + + VVR MPN P
Sbjct: 62  ADVIFIAVKPYHANALMETMKDLTSEGQIFISLMAGVTIAAIQEGLNRKK-VVRAMPNLP 120

Query: 124 ALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLL 183
           A + +G +   A+ +VS  +      LL   G ++ LD E  IDA T +SGSGPAY F  
Sbjct: 121 AQVGKGLTSFTASDEVSRLELSTIENLLDTTGRSVRLDTENDIDASTGISGSGPAYIFYF 180

Query: 184 MQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKS 243
           MQ+M +A  K+G S+  +  L  QT  GA ++  SS+++P     RV S  GTT AA+ S
Sbjct: 181 MQSMLEAALKMGFSKHDSRVLVEQTFAGAVELFSSSDLDPEAWMNRVASKGGTTRAALDS 240

Query: 244 FQANGFEALVEQALNAASQRSAELAEQ 270
              N  + ++++A  AA  R+ EL ++
Sbjct: 241 MDDNNVKEMIKEAAYAAFNRAVELGKE 267


Lambda     K      H
   0.315    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 271
Length adjustment: 25
Effective length of query: 248
Effective length of database: 246
Effective search space:    61008
Effective search space used:    61008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate Echvi_2635 Echvi_2635 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.16381.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16381.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.