Align deoxyribose-phosphate aldolase (EC 4.1.2.4) (characterized)
to candidate Echvi_1588 Echvi_1588 deoxyribose-phosphate aldolase
Query= BRENDA::Q9AIP7 (220 letters) >FitnessBrowser__Cola:Echvi_1588 Length = 221 Score = 189 bits (480), Expect = 4e-53 Identities = 100/211 (47%), Positives = 138/211 (65%), Gaps = 1/211 (0%) Query: 3 INQYIDHTLLKPESRQDQIDKLIREAKTYNFASVCINPTWVSYAAKALEGTDIKVCTVIG 62 IN Y++HT L P Q++++I EA Y F VC+ P WV + LE T I V TV+G Sbjct: 4 INTYLEHTALNPVLTDQQVNRVIHEAMKYRFLGVCVPPFWVKKVKRELENTGITVVTVVG 63 Query: 63 FPLGATTSAVKAFETKDAISHGADEVDMVINIGQAKSG-HFAFVEEDIRAVVEASGDKLV 121 FPLG + K FET+ AI +GADE+D+V ++ K+G ++ +E + V KL+ Sbjct: 64 FPLGYQMTETKVFETQKAIENGADEIDVVWSLSAFKAGMNWPKIELVKLSSVCHEAGKLL 123 Query: 122 KVIIETCLLTDKEKIKACQAAVAAGADFVKTSTGFSTAGARLDDVRLMRQTVGPDVGVKA 181 KVI+ET L E +AC+ AG D VKTSTGF+ +GARL++V+LMR+ + VG+KA Sbjct: 124 KVIVETAYLETDELRQACKICSDAGVDIVKTSTGFAPSGARLEEVKLMREFLPDQVGIKA 183 Query: 182 AGGTRSLEDAQAFIEAGATRIGTSAGVTIME 212 +GG ++LE A+AF+ AGA RIGTSAGV IME Sbjct: 184 SGGIKTLEQAKAFVTAGADRIGTSAGVQIME 214 Lambda K H 0.316 0.131 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 176 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 220 Length of database: 221 Length adjustment: 22 Effective length of query: 198 Effective length of database: 199 Effective search space: 39402 Effective search space used: 39402 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 45 (21.9 bits)
Align candidate Echvi_1588 Echvi_1588 (deoxyribose-phosphate aldolase)
to HMM TIGR00126 (deoC: deoxyribose-phosphate aldolase (EC 4.1.2.4))
../bin/blast/fastacmd -i /tmp/list.5301.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5301.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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