Align mannonate dehydratase (EC 4.2.1.8) (characterized)
to candidate Echvi_1869 Echvi_1869 mannonate dehydratase
Query= BRENDA::P24215 (394 letters) >FitnessBrowser__Cola:Echvi_1869 Length = 387 Score = 425 bits (1093), Expect = e-123 Identities = 212/388 (54%), Positives = 276/388 (71%), Gaps = 7/388 (1%) Query: 3 QTWRWYGPNDPVSLADVRQAGATGVVTALHHIPNGEVWSVEEILKRKAIIEDAGLVWSVV 62 QTWRWYGPNDPVSL DVRQAGATGVV+ALH IP+G+ W ++ I +RKA IE AGL WSVV Sbjct: 5 QTWRWYGPNDPVSLQDVRQAGATGVVSALHQIPHGDEWPIQLIQERKATIEAAGLEWSVV 64 Query: 63 ESVPIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCYNFMPVLDWTRTDLEYVLPDG 122 ESVP+HE IKT + E ++ NY++TLRNL++CGI+TVCYNFMPVLDWTRTDL L +G Sbjct: 65 ESVPVHEAIKTRNDHAEYYLENYRKTLRNLSKCGIKTVCYNFMPVLDWTRTDLALPLANG 124 Query: 123 SKALRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAERFATMSDEDKARLTRNIIAGLP 182 +KAL D + A F++ IL R G EA Y E +A+ ER+A M+ E +A L ++ G+P Sbjct: 125 AKALYLDWTDLAVFDLKILGRAGGEAFYKPEILAKVEERYAAMTKEQQAALQEIVLMGVP 184 Query: 183 GAEEGYTLDQFRKHLELYKDIDKAKLRENFAVFLKAIIPVAEEVGVRMAVHPDDPPRPIL 242 E G TL+ ++ +E+Y I K L+EN FL+ I V EE G+RM +HPDDPP PIL Sbjct: 185 -TEGGVTLEALQESIEVYSSIGKHGLQENLTYFLENIAEVCEEEGIRMTIHPDDPPFPIL 243 Query: 243 GLPRIVSTIEDMQWMVDTVNSMANGFTMCTGSYGVRADNDLVDMIKQFGPRIYFTHLRST 302 GLPRI S+ ED+++++ V+ NG CTGS G NDL M+ G R+YF HLR+ Sbjct: 244 GLPRIASSKEDLEFILQAVDRPFNGICFCTGSLGAGDHNDLPAMLDAVGDRVYFAHLRN- 302 Query: 303 MREDNPKTFHEAAHLNGDVDMYEVVKAIVEEEHRRKAEGKEDLIPMRPDHGHQMLDDLKK 362 +++D FHE+ HL+GDVDM +++ +V+ +R IP RPDHGHQMLDDL+K Sbjct: 303 VKKDALGNFHESDHLDGDVDMCAIMERLVKLNAQR-----HQAIPFRPDHGHQMLDDLQK 357 Query: 363 KTNPGYSAIGRLKGLAEVRGVELAIQRA 390 TNPGYSAIGRLKGLAE+RG+E+ I+ + Sbjct: 358 VTNPGYSAIGRLKGLAELRGLEMGIKNS 385 Lambda K H 0.320 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 453 Number of extensions: 23 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 394 Length of database: 387 Length adjustment: 31 Effective length of query: 363 Effective length of database: 356 Effective search space: 129228 Effective search space used: 129228 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate Echvi_1869 Echvi_1869 (mannonate dehydratase)
to HMM TIGR00695 (uxuA: mannonate dehydratase (EC 4.2.1.8))
../bin/blast/fastacmd -i /tmp/list.7434.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7434.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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