Align Branched-chain-amino-acid aminotransferase 2; BCAT 2; Vegetative protein 85; VEG85; EC 2.6.1.42 (characterized)
to candidate Echvi_2202 Echvi_2202 branched-chain amino acid aminotransferase, group II
Query= SwissProt::P39576 (363 letters) >FitnessBrowser__Cola:Echvi_2202 Length = 355 Score = 334 bits (857), Expect = 2e-96 Identities = 172/356 (48%), Positives = 239/356 (67%), Gaps = 8/356 (2%) Query: 5 TIRVELTSTKKPK---PDPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAA 61 TI +++ T + K D LSFG+V +DHMFV DY + W D RI PY PLS++PA Sbjct: 4 TIDIQIKQTSQSKLQGTDFENLSFGQVMSDHMFVADYKNGE-WQDFRIEPYAPLSLNPAN 62 Query: 62 MVYHYGQTVFEGLKAYVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLV 121 HYGQ+VFEGLKAY E ++VL+FRP+ N +RLN+S DRLCIPQ+ EE +EGL++L+ Sbjct: 63 ATLHYGQSVFEGLKAYKDEHNNVLIFRPDANQQRLNESADRLCIPQLPEEIFMEGLRKLL 122 Query: 122 AIDKDWIPNAEGTSLYIRPFIIATEPFLGVAASHTYKLLIILSPVGSYYKEGIKPVKIAV 181 A+D+DWIPN G SLYIRPFI AT+ +LG+ S TYK +I PVG YY KPV + V Sbjct: 123 AVDRDWIPNKPGCSLYIRPFIFATDDYLGIRPSATYKFMIFTCPVGHYY---AKPVSVKV 179 Query: 182 ESEFVRAVKGGTGNAKTAGNYASSLKAQQVAEEKGFSQVLWLDGIEKKYIEEVGSMNIFF 241 E+++ RA +GGTG AK AGNYA SL Q+A+++G+ Q+LW DG + IEE G+MN+ F Sbjct: 180 ETKYTRAAEGGTGQAKAAGNYAGSLYPAQIAQKQGYDQLLWTDGKNHENIEESGTMNVMF 239 Query: 242 KINGEIVT-PMLNGSILEGITRNSVIALLKHWGLQVSERKIAIDEVIQAHKDGILEEAFG 300 IN ++T P G+IL+GITR+SV+ L K GL+VSER + + E+ +A ++ L+EAFG Sbjct: 240 IINNTLITAPTSKGTILKGITRDSVLTLAKEKGLKVSERFLTVTELKEALENNTLQEAFG 299 Query: 301 TGTAAVISPVGELIWQDETLSINNGETGEIAKKLYDTITGIQKGAVADEFGWTTEV 356 TGTAA I+ + ++ D + + ++ +T+ I+ G D GW T+V Sbjct: 300 TGTAATIAHIYKINVGDTDYDLPEKPADSFSYQVLETLDAIKYGRQEDTHGWITKV 355 Lambda K H 0.316 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 377 Number of extensions: 14 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 363 Length of database: 355 Length adjustment: 29 Effective length of query: 334 Effective length of database: 326 Effective search space: 108884 Effective search space used: 108884 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate Echvi_2202 Echvi_2202 (branched-chain amino acid aminotransferase, group II)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.21593.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21593.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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