Align Dihydrolipoyl dehydrogenase 1, mitochondrial; AtmLPD1; mtLPD1; Dihydrolipoamide dehydrogenase 1; Glycine cleavage system L protein 1; Pyruvate dehydrogenase complex E3 subunit 1; E3-1; PDC-E3 1; EC 1.8.1.4 (characterized)
to candidate Echvi_0770 Echvi_0770 dihydrolipoamide dehydrogenase
Query= SwissProt::Q9M5K3 (507 letters) >FitnessBrowser__Cola:Echvi_0770 Length = 494 Score = 482 bits (1240), Expect = e-140 Identities = 239/464 (51%), Positives = 338/464 (72%), Gaps = 2/464 (0%) Query: 45 DVVIIGGGPGGYVAAIKASQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAK 104 D+++IG GPGGYVAAI+ +QLG+KT +EK LGGTCLNVGCIPSKALL SS YH A Sbjct: 32 DLIVIGSGPGGYVAAIRGAQLGMKTAIVEKYPTLGGTCLNVGCIPSKALLDSSEHYHNAA 91 Query: 105 HSFANHGIKVSSVEVDLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVS 164 H+F HGI + ++V+L M+++KD+ VK GI L KKNK+ +G G F+ N V Sbjct: 92 HTFKTHGIDLKDLKVNLKQMISRKDDVVKQNVDGISYLMKKNKIDVHQGVGSFVDKNTVK 151 Query: 165 VETIDGGNTIVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGY 224 V DG +T + G++II+ATGS SLP I ID+K++++ST AL + EVPK++IVIG G Sbjct: 152 VTKDDGKSTEITGENIIIATGSKPASLPFIEIDKKRVITSTEALKMKEVPKRMIVIGGGV 211 Query: 225 IGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSS 284 IG+E+GSV+ R+G++V+VVEF ++PSMD + K+ Q+SL+K +F LK KV +V S+ Sbjct: 212 IGMELGSVYARMGAKVSVVEFMDSLIPSMDKTMGKELQKSLKKLGFEFYLKHKVTAVKST 271 Query: 285 SDGVKLTVEPAEGGEQSILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNDRFLS 344 + V +T E ++G E + + D VLVS GR P+T GL+ E GV+ + G++ V++ + Sbjct: 272 AKEVTVTAENSKGEEVQV-KGDYVLVSIGRKPYTEGLNPEAAGVKVNDRGQVEVDEHLKT 330 Query: 345 NVPGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKT 404 + +YAIGDV+ G MLAHKAEE+GV E +AG+ H++Y+ +PGVVYT PEVA+VG + Sbjct: 331 SADNIYAIGDVVKGAMLAHKAEEEGVLVAEQLAGQKPHINYNLIPGVVYTWPEVAAVGYS 390 Query: 405 EEQLKKEGVSYRVGKFPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIH 464 EEQLK++G+ Y+ GKFPFMA+ RA+A + +GLVK+LAD ETD+ILGVH++ P ++I Sbjct: 391 EEQLKEKGIKYKTGKFPFMASGRARASMDTDGLVKVLADAETDEILGVHMIGPRTADMIA 450 Query: 465 EAVLAINYDASSEDIARVCHAHPTMSEALKEAAM-ATYDKPIHI 507 EAV+A+ Y AS+EDIAR+ HAHPT +EA KEA + AT ++ +H+ Sbjct: 451 EAVVAMEYRASAEDIARMSHAHPTYTEAFKEACLAATENRALHV 494 Lambda K H 0.315 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 600 Number of extensions: 21 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 507 Length of database: 494 Length adjustment: 34 Effective length of query: 473 Effective length of database: 460 Effective search space: 217580 Effective search space used: 217580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 52 (24.6 bits)
Align candidate Echvi_0770 Echvi_0770 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.3133.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3133.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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