Align Acetyl-coenzyme A synthetase (EC 6.2.1.1) (characterized)
to candidate Echvi_1268 Echvi_1268 acetate--CoA ligase
Query= reanno::pseudo5_N2C3_1:AO356_18695 (651 letters) >FitnessBrowser__Cola:Echvi_1268 Length = 632 Score = 721 bits (1861), Expect = 0.0 Identities = 356/618 (57%), Positives = 441/618 (71%), Gaps = 6/618 (0%) Query: 28 YQQSVVNPDGFWREQAKRLDWIKPFTTVKQTSFDDHHVDIKWFADGTLNVSYNCLDRHLA 87 YQ+SV P+ FW A W K + V + F+ D+KWF +G +N++ N L+RHL Sbjct: 15 YQKSVTEPEQFWARIADSFHWKKRWDKVLEWDFEGP--DVKWFVNGKVNITENILERHLF 72 Query: 88 ERGDQIAIIWEGDDPSES-RNITYRELHEEVCKFANALRGQDVHRGDVVTIYMPMIPEAV 146 GD+ AIIWE +DP+E R +TYR+L+ EVCKF+NAL+ + + +GD V IYMPM+PEA Sbjct: 73 IMGDRPAIIWEPNDPNEEGRTLTYRQLYHEVCKFSNALKAKGIGKGDKVIIYMPMVPEAA 132 Query: 147 VAMLACTRIGAIHSVVFGGFSPEALAGRIIDCKSKVVITADEGVRAGKKIPLKANVDDAL 206 +AMLAC RIGA+HSVVF GFS ALA RI DC++K V+T+D R KKI +K VD+AL Sbjct: 133 IAMLACARIGAVHSVVFAGFSSSALADRINDCEAKAVLTSDGNFRGTKKIAVKDLVDEAL 192 Query: 207 TNPETSSIQKVIVCKRTAGNIKWNQHRDIWYEDLMKVAGTVCAPKEMGAEEALFILYTSG 266 +T +I+ VIV +RT +K + RDIW+ D + + M +E+ LFILYTSG Sbjct: 193 E--KTKTIETVIVYQRTKQEVKMVEGRDIWWHDAIDGQPDTNEAEVMDSEDMLFILYTSG 250 Query: 267 STGKPKGVQHTTAGYLLYAALTHERVFDYKPGEVYWCTADVGWVTGHSYIVYGPLANGAT 326 STGKPKGV HTT GY++Y+ T E VF Y PG+VYWCTAD+GW+TGHSYIVYGPL GAT Sbjct: 251 STGKPKGVVHTTGGYMVYSKYTFENVFQYSPGDVYWCTADIGWITGHSYIVYGPLLAGAT 310 Query: 327 TLLFEGVPNYPDITRVAKVIDKHKVSILYTAPTAIRAMMASGTAAVEGADGSSLRLLGSV 386 +++FEGVP YPD R ++DK++V+ YTAPTAIRA+ A GT +E SL++LGSV Sbjct: 311 SIMFEGVPTYPDAGRFWAIVDKYQVNQFYTAPTAIRALEAHGTKPIEPYKLDSLKVLGSV 370 Query: 387 GEPINPEAWDWYYKNVGKERCPIVDTWWQTETGGVLISPLPGATALKPGSATRPFFGVVP 446 GEPIN EAW WY+ +VGK RCPIVDTWWQTETGG+++SP+ G T KP AT P GV Sbjct: 371 GEPINEEAWHWYHTHVGKNRCPIVDTWWQTETGGIMVSPIAGITPNKPAYATMPLPGVQL 430 Query: 447 ALVDNLGNLIEG-AAEGNLVILDSWPGQARTLYGDHDRFVDTYFKTFSGMYFTGDGARRD 505 A+VD G ++G A EGNL I WPG RT YGDHDR TYF + GMYFTGDG +RD Sbjct: 431 AIVDPEGKELKGKAVEGNLCIKFPWPGMLRTTYGDHDRCKQTYFSAYPGMYFTGDGVKRD 490 Query: 506 EDGYYWITGRVDDVLNVSGHRMGTAEIESAMVAHPKVAEAAVVGVPHDIKGQGIYVYVTL 565 DGYY I GRVDDV+NVSGHRMGTAEIE+A+ HPKV E+AVVG PH++KGQGIY YV Sbjct: 491 HDGYYRILGRVDDVINVSGHRMGTAEIENAINEHPKVIESAVVGYPHEVKGQGIYAYVIC 550 Query: 566 NAGEETSEALRLELKNWVRKEIGPIASPDVIQWAPGLPKTRSGKIMRRILRKIATAEYDG 625 + T E L E+K+ + K IGPIA PD IQ PGLPKTRSGKIMRRILRK+A +D Sbjct: 551 DLKNRTEENLIGEIKDTITKSIGPIAKPDKIQIVPGLPKTRSGKIMRRILRKVAEGSFDN 610 Query: 626 LGDISTLADPGVVAHLIE 643 +GD STL DP VV +IE Sbjct: 611 MGDTSTLLDPAVVEEIIE 628 Lambda K H 0.318 0.135 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1327 Number of extensions: 59 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 651 Length of database: 632 Length adjustment: 38 Effective length of query: 613 Effective length of database: 594 Effective search space: 364122 Effective search space used: 364122 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate Echvi_1268 Echvi_1268 (acetate--CoA ligase)
to HMM TIGR02188 (acs: acetate--CoA ligase (EC 6.2.1.1))
../bin/blast/fastacmd -i /tmp/list.16983.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16983.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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