Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate Echvi_4609 Echvi_4609 dihydrolipoamide dehydrogenase
Query= BRENDA::P50970 (466 letters) >FitnessBrowser__Cola:Echvi_4609 Length = 465 Score = 447 bits (1149), Expect = e-130 Identities = 232/461 (50%), Positives = 315/461 (68%), Gaps = 2/461 (0%) Query: 5 FDLIVLGGGPGGYVAAIRAAQLNLKVALVERVHLGGICLNWGCIPTKSLLRSAEVYHEMQ 64 FD+IV+G GPGGYVAAIRA+QL LK A+VE LGGICLNWGCIPTK+LL+SA+V+ + Sbjct: 6 FDVIVVGSGPGGYVAAIRASQLGLKTAVVEAAELGGICLNWGCIPTKALLKSAQVFEYIN 65 Query: 65 NAEAYGLTSFKPDFDLDKIIARSREVATRLASGVKTLLRKNKVEVISGVGQLTGNQQMLV 124 +A+ YG+T P D ++ RSR VA ++ G++ LL+KNK+E + G G++ +++ V Sbjct: 66 HAKDYGITVKDPKADFGGMVKRSRGVADGMSKGIQFLLKKNKIEQLLGWGKVKPGKKVEV 125 Query: 125 ETTEGEEKILEAKDIIIATGARARQLPNVHSDGKHIWTYHHALKPPAMPKKLLVIGSGAI 184 E +G++ A +IIIATGAR+R+LP + D K I Y A+ PKK++V+GSGAI Sbjct: 126 EDKDGKKTTYSADNIIIATGARSRELPAIKIDDKKIIGYRKAMTLEKQPKKMVVVGSGAI 185 Query: 185 GIEFASFYADFGAEVSIVEHAPQILPMEDAEVSAYVAKAFKKRGIRILTQSALQNLTPDD 244 G+EFA FYA G EV++VE +I+P EDAEVS + + +KK G+ I+T + + ++ Sbjct: 186 GVEFAYFYAAIGTEVTVVEFMDRIVPNEDAEVSKALERMYKKAGMNIMTSTEVTSVDTKG 245 Query: 245 EGVTAEIAGADGKVTKERFSHAIVAIGVVANVENIGLDKLGIKLDRGFIAVDGFGRTNVD 304 G + G+ T + + A GVVANVEN GL+ +GI +D+G I VD F +TN+ Sbjct: 246 SGCKVTVKTKKGEETID-CDVVLSAAGVVANVENCGLEDVGIVVDKGRIKVDEFYKTNMP 304 Query: 305 HVWAIGDVAGAPCLAHKASHQGVIAAEAIAGCDHVHPLNTQNIPGCTYARPQVASVGLTE 364 +AIGDV P LAH AS +G+I E IAG D PL+ NIPGCTY P++ASVG TE Sbjct: 305 GYYAIGDVIPGPALAHVASAEGIICVEKIAGHD-PEPLDYNNIPGCTYCVPEIASVGYTE 363 Query: 365 EKARQQGYNVKIGNFPFIANGKAIAQGATDGFVKTVFDADSGALLGAHMVGAEVTEMIQG 424 EKA++ GY +K+G FPF A+GKA A GA+DGFVK +FDA G LLGAHM+GA VTEMI Sbjct: 364 EKAKEAGYELKVGKFPFSASGKAKAAGASDGFVKLIFDAKYGELLGAHMIGANVTEMIAE 423 Query: 425 YTVARTLETTEAEIMETIFPHPTLSEAMHESVLAAYGRALH 465 R LETT E+++T+ PHPT+SEA+ E+ AAY +H Sbjct: 424 IVAVRKLETTGHELIKTVHPHPTMSEAVMEAAAAAYDEVIH 464 Lambda K H 0.319 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 585 Number of extensions: 25 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 466 Length of database: 465 Length adjustment: 33 Effective length of query: 433 Effective length of database: 432 Effective search space: 187056 Effective search space used: 187056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate Echvi_4609 Echvi_4609 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.26087.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26087.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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