Align Acetaldehyde dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; EC 1.2.1.10 (characterized)
to candidate RR42_RS05100 RR42_RS05100 acetaldehyde dehydrogenase
Query= SwissProt::Q9KWS1 (316 letters) >FitnessBrowser__Cup4G11:RR42_RS05100 Length = 321 Score = 445 bits (1144), Expect = e-130 Identities = 225/305 (73%), Positives = 256/305 (83%) Query: 2 SDDRLSVAIIGSGNIGTDLMIKIMRNSKLLKVGAMVGIDPKSDGLARAQRLGVPTTAEGV 61 S RL AIIGSGNIGTDLMIKI+R+ + L+VGAMVGID SDGLARAQRLGVPTT EG+ Sbjct: 5 SRTRLRAAIIGSGNIGTDLMIKILRHGQHLEVGAMVGIDAASDGLARAQRLGVPTTHEGI 64 Query: 62 DGLLDMPAFRDIKIAFDATSAGAQAIHNQKLQAHGVRVIDLTPAAIGPYVIPVVNFDQHV 121 +GLL MP F DI++AFDATSAGA HN LQ HG++VIDLTPAAIGPYV+PVVN D H+ Sbjct: 65 EGLLGMPGFADIRVAFDATSAGAHMHHNAVLQKHGIQVIDLTPAAIGPYVVPVVNLDAHL 124 Query: 122 DAPNINMVTCGGQATIPIVHAVSKVSPVHYAEIVASISSKSAGPGTRANIDEFTETTSKA 181 DAPN+NMVTCGGQATIPIV AVS+V+PV YAEIVASI+S+SAGPGTRANIDEFTETTS A Sbjct: 125 DAPNLNMVTCGGQATIPIVRAVSQVAPVSYAEIVASIASRSAGPGTRANIDEFTETTSNA 184 Query: 182 ILEVGGAAQGRAIIILNPAEPPLIMRDTVYCFVSAEANIDAITDSVEQMVKSVQEYVPGY 241 I++VGGAA G+AII+LNPAEPPL+MRDTV+C +A+A DAI SVE+MV V YVPGY Sbjct: 185 IVQVGGAAHGKAIIVLNPAEPPLLMRDTVFCLTAADAGQDAIRASVERMVAQVAAYVPGY 244 Query: 242 RLKQKVQFEKIVAGNEQNIPGLGWSTGLKVSVFLEVEGAGHYLPSYAGNLDIMTSAGLTV 301 RLKQ VQFE+I +PG+G GLKVSVFLEVEGA HYLP+YAGNLDIMTSA L Sbjct: 245 RLKQHVQFERIDPACPLTLPGIGRLAGLKVSVFLEVEGAAHYLPAYAGNLDIMTSAALAA 304 Query: 302 AERIA 306 AER+A Sbjct: 305 AERVA 309 Lambda K H 0.317 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 392 Number of extensions: 13 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 316 Length of database: 321 Length adjustment: 27 Effective length of query: 289 Effective length of database: 294 Effective search space: 84966 Effective search space used: 84966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate RR42_RS05100 RR42_RS05100 (acetaldehyde dehydrogenase)
to HMM TIGR03215 (acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10))
../bin/blast/fastacmd -i /tmp/list.27976.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27976.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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