Align Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) (characterized)
to candidate RR42_RS10690 RR42_RS10690 3-oxoadipate enol-lactonase
Query= reanno::pseudo3_N2E3:AO353_17230 (266 letters) >FitnessBrowser__Cup4G11:RR42_RS10690 Length = 259 Score = 288 bits (738), Expect = 6e-83 Identities = 143/258 (55%), Positives = 181/258 (70%), Gaps = 3/258 (1%) Query: 3 FVQLADGELKYQLDGPEHAPVLVLSNSLGTNLHMWDVQIPAFTKHFRVLRFDTRGHGRSL 62 F + L Y+LDG + PVLVL+NSLGTNL MW+ QI AF KHFRVLR+DTRGHG+S Sbjct: 3 FAEFPGVRLHYRLDGDDTLPVLVLANSLGTNLDMWNPQIEAFAKHFRVLRYDTRGHGQSS 62 Query: 63 VTPGPYSIEQLGRDVLALLDALNIERAHFCGLSMGGLIGQWLGINAGERLHKLVVCNTAA 122 VTPGPY+I QLG DV+ALLDAL I+RAHFCGLSMGG+ G WL +N R K+V+CNTAA Sbjct: 63 VTPGPYTIPQLGEDVIALLDALKIDRAHFCGLSMGGITGMWLALNHAGRFDKVVLCNTAA 122 Query: 123 KIGDPSVWNPRIETVLRDGPAAMVALRDASIARWFTPDFAQANPAVAKQITDMLAATSPQ 182 IG W R V RDG + ++ +A + +W TP +A PA+ + + ML+AT Sbjct: 123 YIGPAENWTNRAAAVERDG---VGSIANAVVDKWLTPGYAAGQPALVQLLQAMLSATDAA 179 Query: 183 GYAANCAAVRDADFREQLASITVPTLVIAGTEDAVTPPSGGRFIQERVRGAEYAEFYAAH 242 GYAANC AVRD+D R+ +A IT PTLVIAG+ D TPP G+++ +++ GA YAE AAH Sbjct: 180 GYAANCRAVRDSDLRDAVAGITRPTLVIAGSGDIPTPPHDGQYLAQKIPGARYAELDAAH 239 Query: 243 LSNVQAGSAFSDRVLSFL 260 LSN++ F+D VL FL Sbjct: 240 LSNLEQVEGFTDAVLEFL 257 Lambda K H 0.321 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 272 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 266 Length of database: 259 Length adjustment: 25 Effective length of query: 241 Effective length of database: 234 Effective search space: 56394 Effective search space used: 56394 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate RR42_RS10690 RR42_RS10690 (3-oxoadipate enol-lactonase)
to HMM TIGR02427 (pcaD: 3-oxoadipate enol-lactonase (EC 3.1.1.24))
../bin/blast/fastacmd -i /tmp/list.17803.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17803.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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