Align 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) (characterized)
to candidate RR42_RS32050 RR42_RS32050 AraC family transcriptional regulator
Query= BRENDA::Q0SH24 (400 letters) >FitnessBrowser__Cup4G11:RR42_RS32050 Length = 397 Score = 277 bits (709), Expect = 3e-79 Identities = 154/376 (40%), Positives = 210/376 (55%), Gaps = 6/376 (1%) Query: 15 GAADAPVVVLLGSLGSNRSMWDPQIAALSYECRVVAVDQRGHGESPAPDGPYSVRDLSED 74 G A APV++ SLG++ +MW PQ+ AL + R++ D RGHG S P GP SV +L D Sbjct: 17 GPASAPVLIFSNSLGTDHTMWAPQVEALGQQFRILRYDTRGHGRSALPPGPSSVAELGSD 76 Query: 75 VLALLDSLGVDAAHFVGLSMGGAIAQWLGAHAPRRVLSLSLLCTAAKFGEPQAWIERAAA 134 V+AL+D+L + A F GLSMGG WLG +AP+R + L TA + G +AW R Sbjct: 77 VIALMDALQIQKAAFCGLSMGGLTGMWLGVNAPQRFTRIVLANTAPRIGTHEAWNTRIEG 136 Query: 135 SRTDGPESLADAVVARWFSEGLAKRDPEFVRHYREMIASTSPEGYAACCDALADWDFTAD 194 DG L + + RWF+ + R+++ GYAA C A+ D D Sbjct: 137 VLRDGMTPLVEGSLQRWFTPAFVSAAGNQLDDLRQVLTGLDARGYAANCAAVRDADLREA 196 Query: 195 LSRISAPTLVIAGEEDPSTPPSVMQILADGITEARFEVLSPAAHVANLEQAGAVTALLRE 254 + I P LVIAG DPST + LAD I AR+ L AAH++N EQ T L + Sbjct: 197 VKTIPVPVLVIAGSADPSTTAEQGRALADAIPGARYLELE-AAHLSNREQPARFTEALLD 255 Query: 255 HIVG-AGYARGRRA----AHAQGMTVRRSILGDAHVDRSVAGTTDFTAPFQDFITRTAWG 309 + G A A GR A + G+ VRR++LG AHVDRS+A T FQ+ ITR AWG Sbjct: 256 FLGGDAQQAAGRPANDGERYQAGLAVRRAVLGSAHVDRSLAKLNPLTEEFQNLITRYAWG 315 Query: 310 DIWSRPGLDHELRRLLTIAVLTAVGNEHELDMHIRAALRAGVDADTIGEVLLHTSVYAGV 369 +IW+R GL R L+TIA++ A+ EL +H+RAA V D + EVLL T++Y GV Sbjct: 316 EIWTREGLPRHSRSLITIAMMVALNRGEELKLHLRAAANNKVSRDEVKEVLLQTAIYCGV 375 Query: 370 PNSNLGFALGKQALAD 385 P +N F + ++ A+ Sbjct: 376 PAANSAFHMAEEVFAE 391 Lambda K H 0.318 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 411 Number of extensions: 16 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 397 Length adjustment: 31 Effective length of query: 369 Effective length of database: 366 Effective search space: 135054 Effective search space used: 135054 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate RR42_RS32050 RR42_RS32050 (AraC family transcriptional regulator)
to HMM TIGR02427 (pcaD: 3-oxoadipate enol-lactonase (EC 3.1.1.24))
../bin/blast/fastacmd -i /tmp/list.2453.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2453.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.