Align 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) (characterized)
to candidate RR42_RS26240 RR42_RS26240 4-aminobutyrate aminotransferase
Query= BRENDA::Q0K2K2 (423 letters) >FitnessBrowser__Cup4G11:RR42_RS26240 Length = 420 Score = 600 bits (1548), Expect = e-176 Identities = 293/421 (69%), Positives = 344/421 (81%), Gaps = 1/421 (0%) Query: 3 MKNLELNQRRTLATPRGVGVMCDFYADRAENATLWDVEGRAYTDFAAGIAVLNTGHRHPR 62 MKN +L +R+ ATPRGVGVMC+FYA+RAEN+ LWDVEG Y DFAAGIAVLNTGHRHPR Sbjct: 1 MKNADLVRRKDAATPRGVGVMCNFYAERAENSELWDVEGNRYIDFAAGIAVLNTGHRHPR 60 Query: 63 VMQAIAAQLERFTHTAYQIVPYQGYVTLAERINALVPIQGLNKTALFTTGAEAVENAIKI 122 ++QA+ AQ+ERFTHTAYQIVPY Y+ LAE+INA P KTA FTTGAEAVENAIKI Sbjct: 61 LVQAMQAQMERFTHTAYQIVPYASYIELAEKINARAPGAFAKKTAFFTTGAEAVENAIKI 120 Query: 123 ARAHTGRPGVIAFSGAFHGRTLLGMALTGKVAPYKIGFGPFPSDIYHAPFPSALHGVSTE 182 ARA TGRPGVIAFSG FHGRT++GMALTGKV PYK+GFGPFP D++HAP+P LHGVS + Sbjct: 121 ARAATGRPGVIAFSGGFHGRTMMGMALTGKVVPYKVGFGPFPGDVFHAPYPYGLHGVSVQ 180 Query: 183 RALQALEGLFKTDIDPARVAAIIVEPVQGEGGFQAAPADFMRGLRAVCDQHGIVLIADEV 242 ++ AL LFK D+DP RVAAII EPVQGEGGF APA+F+R LRA+CD+HGI+L+ADEV Sbjct: 181 DSINALHQLFKADVDPKRVAAIIFEPVQGEGGFNVAPAEFVRALRAICDEHGILLVADEV 240 Query: 243 QTGFGRTGKMFAMSHHDVEPDLITMAKSLAGGMPLSAVSGRAAIMDAPLPGGLGGTYAGN 302 QTGFGRTGK+FAM H+DV PDL TMAKSLAGGMPLSAV GRA IMDAP PGGLGGTYAGN Sbjct: 241 QTGFGRTGKLFAMEHYDVTPDLTTMAKSLAGGMPLSAVCGRAEIMDAPAPGGLGGTYAGN 300 Query: 303 PLAVAAAHAVIDVIEEEKLCERSASLGQQLREHLLAQRKHCPAMAEVRGLGSMVAAEFCD 362 PLAVA+A AV+DV+E EKL ER A+LGQ+L++ L + P + EVRG+G+M+A EF Sbjct: 301 PLAVASALAVLDVLESEKLIERGAALGQRLQDKLDGLKSRVPEIGEVRGVGAMIAVEF-R 359 Query: 363 PATGQPSAEHAKRVQTRALEAGLVLLTCGTYGNVIRFLYPLTIPQAQFDAALAVLTQALA 422 A G+P E ++VQ RALE GL+LL+CG YGNV+RFL+PLTIP A D L +L AL Sbjct: 360 KADGRPDPEFTRQVQDRALERGLLLLSCGVYGNVVRFLFPLTIPDAVMDEGLGILEAALL 419 Query: 423 E 423 + Sbjct: 420 Q 420 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 631 Number of extensions: 16 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 423 Length of database: 420 Length adjustment: 32 Effective length of query: 391 Effective length of database: 388 Effective search space: 151708 Effective search space used: 151708 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.9 bits)
Align candidate RR42_RS26240 RR42_RS26240 (4-aminobutyrate aminotransferase)
to HMM TIGR00700 (gabT: 4-aminobutyrate transaminase (EC 2.6.1.19))
../bin/blast/fastacmd -i /tmp/list.29021.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29021.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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