Align acylating aldehyde dehydrogenase (EC 1.2.1.10) (characterized)
to candidate RR42_RS27895 RR42_RS27895 acetaldehyde dehydrogenase
Query= metacyc::MONOMER-11388 (316 letters) >FitnessBrowser__Cup4G11:RR42_RS27895 Length = 316 Score = 496 bits (1278), Expect = e-145 Identities = 255/316 (80%), Positives = 276/316 (87%), Gaps = 1/316 (0%) Query: 1 MTRKVKAAIIGSGNIGTDLMIKILRHGQHIEMGAMVGIDPASDGLARGERMGVAITHEGV 60 MTRK+KAAIIGSGNIGTDLMIKILRHG H+EMGAMVGIDPASDGLAR R+GVA THEGV Sbjct: 1 MTRKLKAAIIGSGNIGTDLMIKILRHGAHVEMGAMVGIDPASDGLARAARLGVATTHEGV 60 Query: 61 EGLTRLPVFNEIDVVFDATSAGAHVKNEALLRERKPGLRMIDLTPAAIAPYCIPVVNGDD 120 +GLTRLPVF EIDVVFDATSAGAHVKN+A LR +P LRMIDLTPAAI PYCIPVVNGD Sbjct: 61 QGLTRLPVFGEIDVVFDATSAGAHVKNDAFLRGLRPSLRMIDLTPAAIGPYCIPVVNGDA 120 Query: 121 HLDATNVNMVTCGGQATIPMVAAVSRVAKVHYAEIIASISSKSAGPGTRANIDEFTETTS 180 HLDA NVNMVTCGGQATIPMVAAVSRVA V YAEI+ASISSKSAGPGTRANIDEFTETTS Sbjct: 121 HLDAHNVNMVTCGGQATIPMVAAVSRVAPVLYAEIVASISSKSAGPGTRANIDEFTETTS 180 Query: 181 KAIEVVGGAAKGKAIIVLNPAEPPLMMRDAVYTLSDFADIDQIEESVQRMADAVQAYVPG 240 KAIE +GGA KGKAIIVLNPAEPPL+MRD VY LS+ AD I S+ MA V+ YVPG Sbjct: 181 KAIEAIGGAGKGKAIIVLNPAEPPLIMRDTVYCLSEMADEAAIAASIDAMAAEVRQYVPG 240 Query: 241 YRLKQRVQFDRIEADCPIRIPGVGDRMNGLKTSIFLEVEGAAHYLPAYAGNLDIMTSAAL 300 YRLKQ+VQFDRI AD P+ +PGVG R++GLKTS+FLEVEGAAHYLPAYAGNLDIMTSAAL Sbjct: 241 YRLKQKVQFDRIPADAPLVVPGVG-RVSGLKTSVFLEVEGAAHYLPAYAGNLDIMTSAAL 299 Query: 301 RTAEKLAERLLASLVA 316 AE++A +LA A Sbjct: 300 TIAERMASAMLAQRAA 315 Lambda K H 0.319 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 397 Number of extensions: 5 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 316 Length of database: 316 Length adjustment: 27 Effective length of query: 289 Effective length of database: 289 Effective search space: 83521 Effective search space used: 83521 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate RR42_RS27895 RR42_RS27895 (acetaldehyde dehydrogenase)
to HMM TIGR03215 (acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10))
../bin/blast/fastacmd -i /tmp/list.25368.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25368.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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