Align phosphogluconate dehydratase (EC 4.2.1.12) (characterized)
to candidate RR42_RS37440 RR42_RS37440 phosphogluconate dehydratase
Query= BRENDA::Q1PAG1 (608 letters) >FitnessBrowser__Cup4G11:RR42_RS37440 Length = 608 Score = 736 bits (1901), Expect = 0.0 Identities = 370/597 (61%), Positives = 448/597 (75%), Gaps = 1/597 (0%) Query: 2 HPRVLEVTERLVARSRATREAYLALIRGAASDGPQRGKLQCANFAHGVAGCGSEDKHSLR 61 HP + VT R+VARS ATR+ Y+ R A +R +L C N AH VA + K L+ Sbjct: 4 HPVLERVTARIVARSAATRQTYMDRTRAMAGQKVERAQLSCTNLAHAVAAMPEQAKIRLK 63 Query: 62 MMNAANVAIVSSYNDMLSAHQPYEHFPEQIKKALREMGSVGQFAGGTPAMCDGVTQGEAG 121 N+AIVSSYNDMLSAHQP +P+ +K+A E G QFAGGTPAMCDGVTQG+ G Sbjct: 64 AQERPNLAIVSSYNDMLSAHQPLAEYPQWLKEAALEAGGTAQFAGGTPAMCDGVTQGQDG 123 Query: 122 MELSLPSREVIALSTAVALSHNMFDAALMLGICDKIVPGLMMGALRFGHLPTIFVPGGPM 181 M+LSL SR+VIALSTAVALSH MFD AL LG+CDKIVPGL+MGAL FGHLP IFVPGGPM Sbjct: 124 MDLSLFSRDVIALSTAVALSHQMFDGALYLGVCDKIVPGLVMGALSFGHLPAIFVPGGPM 183 Query: 182 PSGISNKEKADVRQRYAEGKATREELLESEMKSYHSPGTCTFYGTANTNQLLMEVMGLHL 241 +GI N+EKA VRQRYAEGK +R ELLE+E +SYH PGTCTFYGTAN+NQ+LME+MGLHL Sbjct: 184 TTGIGNEEKARVRQRYAEGKLSRAELLEAESQSYHGPGTCTFYGTANSNQMLMEIMGLHL 243 Query: 242 PGASFVNPYTPLRDALTHEAAQQVTRLTKQSGNFTPIGEIVDERSLVNSIVALHATGGST 301 PG +FVNP TPLR+ALT E+A+Q RL +TP+ +++DER+ VN IV L ATGGST Sbjct: 244 PGTAFVNPNTPLREALTRESARQALRLVHGGDRYTPVADVLDERAFVNGIVGLLATGGST 303 Query: 302 NHTLHMPAIAQAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMAFLIRELL 361 NHTLH+ A+A+ AGI L W D A+LSEVVP L+ VYPNG AD+N FQAAGG+ +IR LL Sbjct: 304 NHTLHLVAMARTAGIMLGWDDFAELSEVVPLLARVYPNGSADVNQFQAAGGLGLVIRGLL 363 Query: 362 EAGLLHEDVNTVAGRGLSRYTQEPFLDNGKLVWRDGPIESLDENILRPVARAFSPEGGLR 421 + GLLH+DV TV G+GL+ YT+EP L +G+L W DGP LD+ I+R + F+PEGG+R Sbjct: 364 QLGLLHDDVTTVVGKGLADYTREPVLRDGQLTWIDGPEAPLDDTIVRAAGQPFAPEGGIR 423 Query: 422 VMEGNLGRGVMKVSAVALQHQIVEAPAVVFQDQQDLADAFKAGELEKDFVAVMRFQGPRS 481 +++GN+GR V+K+SAV +H IV+APA+VF Q L +AFK GELE+DFVAV+ +QGP + Sbjct: 424 LLDGNIGRAVLKISAVKPEHHIVQAPAMVFHTQDALIEAFKRGELERDFVAVLPWQGPAA 483 Query: 482 NGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVSPEAQVGGALARVRDG 541 GMPELHK+TP L VLQDRGF VALVTDGRMSGASGK+PAAIHV PEA GG +ARVRDG Sbjct: 484 CGMPELHKLTPTLTVLQDRGFHVALVTDGRMSGASGKVPAAIHVCPEALSGGGIARVRDG 543 Query: 542 DIIRVDGVKGTLELKVDADEFAARE-PAKGLLGNNVGSGRELFGFMRMAFSSAEQGA 597 D +RVD G L + V E+AAR L N G GR+LF R S+AE GA Sbjct: 544 DPMRVDAHAGVLTVLVPQAEWAARSVTPPDLSANRHGVGRDLFANFRRHVSTAEAGA 600 Lambda K H 0.318 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1142 Number of extensions: 54 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 608 Length of database: 608 Length adjustment: 37 Effective length of query: 571 Effective length of database: 571 Effective search space: 326041 Effective search space used: 326041 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate RR42_RS37440 RR42_RS37440 (phosphogluconate dehydratase)
to HMM TIGR01196 (edd: phosphogluconate dehydratase (EC 4.2.1.12))
../bin/blast/fastacmd -i /tmp/list.18130.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18130.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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