Align Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 (characterized)
to candidate RR42_RS13810 RR42_RS13810 glycerol kinase
Query= SwissProt::O66131 (496 letters) >FitnessBrowser__Cup4G11:RR42_RS13810 Length = 520 Score = 600 bits (1547), Expect = e-176 Identities = 290/496 (58%), Positives = 370/496 (74%), Gaps = 7/496 (1%) Query: 3 QYMLAIDQGTTSSRAILFNQKGEIVHMAQKEFTQYFPQPGWVEHNANEIWGSVLAVIASV 62 Q++LA+DQGT+SSRAILF+ G + +AQ+EF QY+P PG VEH+ EIW S LAV V Sbjct: 11 QFVLALDQGTSSSRAILFDHAGNVARVAQREFRQYYPHPGHVEHDPYEIWQSQLAVAHEV 70 Query: 63 LSEAQVKPEQVAGIGITNQRETTVVWEKDTGNPIYNAIVWQSRQTAGICDELKAKGYDPL 122 L++A V QV+ IGITNQRETTV+W++ TG PI A+VWQ R+TA +C+ L+A G+ L Sbjct: 71 LNDAGVAASQVSAIGITNQRETTVLWDRQTGEPIGRALVWQDRRTAPMCEALQADGHGEL 130 Query: 123 FRKKTGLLIDAYFSGTKVKWILDHVDGARERAERGELLFGTIDTWLIWKLSGGRVHVTDY 182 FR KTGL+IDAYFSGTK++W+LD+ +GARERA RGEL FGT+D+WLIW+L+ G+ HVTD Sbjct: 131 FRDKTGLIIDAYFSGTKLRWMLDNTEGARERAARGELAFGTVDSWLIWQLTDGKRHVTDV 190 Query: 183 SNASRTLMFNIHTLEWDDELLDILGVPKAMLPEVRPSSEVYAKTAPYHFFGVEVPIAGAA 242 SNASRT++FNIH +WDD+LLD+L +P+++LPEV PSS A+TA FG E+PIAG A Sbjct: 191 SNASRTMLFNIHAFQWDDDLLDLLDIPRSLLPEVVPSSGEVARTA-LRLFGAEIPIAGIA 249 Query: 243 GDQQAALFGQACFTEGMAKNTYGTGCFMLMNTGEKAVASKHGLLTTIAWGIDG------K 296 GDQQAA +GQAC + GMAKNTYGTGCF+LMNTG + V S + LLTTI W + G + Sbjct: 250 GDQQAATYGQACLSPGMAKNTYGTGCFLLMNTGSQPVTSHNRLLTTIGWQLGGTTPPASR 309 Query: 297 VEYALEGSIFVAGSAIQWLRDGLRMIKTAADSETYAEKVESTDGVYVVPAFIGLGTPYWD 356 +Y LEG +F+ G+ IQWLRDGL++I +A + E A + + T+GV +VPAF GLG P+WD Sbjct: 310 TQYCLEGGVFMGGATIQWLRDGLQIINSAPEVEPLARQCDDTEGVVLVPAFAGLGAPHWD 369 Query: 357 SEVRGAVFGLTRGTTKEHFIRATLESLAYQTKDVLAVMEADSGISLTTLRVDGGAVKNNF 416 RG + GLTRGT + H RA LES+A Q+ DVL M+ D+GISL LRVDGGA +++ Sbjct: 370 PFARGTLVGLTRGTGRAHIARAALESIALQSVDVLDAMQKDAGISLAELRVDGGASRSDL 429 Query: 417 LMQFQSDLLAVPVERPVVNETTALGAAYLAGLAVGYWNSRDDIAAQWQLERRFEPKMDDD 476 LMQ Q+DLL V RP V ETTALGAAYLAGLA GYW+ D+IA+QWQ+E RFEP + D Sbjct: 430 LMQMQADLLGTAVVRPRVTETTALGAAYLAGLATGYWSGEDEIASQWQMEHRFEPNLSAD 489 Query: 477 KRTMLYDGWKKAVRAA 492 R W +AV A Sbjct: 490 ARAYRLWRWHRAVERA 505 Lambda K H 0.319 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 839 Number of extensions: 36 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 496 Length of database: 520 Length adjustment: 34 Effective length of query: 462 Effective length of database: 486 Effective search space: 224532 Effective search space used: 224532 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate RR42_RS13810 RR42_RS13810 (glycerol kinase)
to HMM TIGR01311 (glpK: glycerol kinase (EC 2.7.1.30))
../bin/blast/fastacmd -i /tmp/list.18497.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18497.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.