Align Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 (characterized)
to candidate RR42_RS07610 RR42_RS07610 acetyl-CoA acetyltransferase
Query= SwissProt::P14611 (393 letters) >FitnessBrowser__Cup4G11:RR42_RS07610 Length = 393 Score = 711 bits (1836), Expect = 0.0 Identities = 361/393 (91%), Positives = 377/393 (95%) Query: 1 MTDVVIVSAARTAVGKFGGSLAKIPAPELGAVVIKAALERAGVKPEQVSEVIMGQVLTAG 60 MTD+VIVSAARTAVGKFGGSLAKIPAPELGA+VIKAALERAGVKPEQVSEVIMGQVLTAG Sbjct: 1 MTDIVIVSAARTAVGKFGGSLAKIPAPELGAIVIKAALERAGVKPEQVSEVIMGQVLTAG 60 Query: 61 SGQNPARQAAIKAGLPAMVPAMTINKVCGSGLKAVMLAANAIMAGDAEIVVAGGQENMSA 120 SGQNPARQAA+KAGLP MVPAMTINKVCGSGLKAVMLAANAI AGDAEIVVAGGQENMSA Sbjct: 61 SGQNPARQAALKAGLPVMVPAMTINKVCGSGLKAVMLAANAIAAGDAEIVVAGGQENMSA 120 Query: 121 APHVLPGSRDGFRMGDAKLVDTMIVDGLWDVYNQYHMGITAENVAKEYGITREAQDEFAV 180 APHVLPGSRDGFRMGDAKL+D+MIVDGLWDVYNQYHMG+TAENVAKEYGITREAQD FA Sbjct: 121 APHVLPGSRDGFRMGDAKLIDSMIVDGLWDVYNQYHMGVTAENVAKEYGITREAQDAFAA 180 Query: 181 GSQNKAEAAQKAGKFDEEIVPVLIPQRKGDPVAFKTDEFVRQGATLDSMSGLKPAFDKAG 240 GSQNKAEAAQKAGKFDEEIVPV IPQRKGDPV F TDEFVR G T D+++GLKPAFDKAG Sbjct: 181 GSQNKAEAAQKAGKFDEEIVPVPIPQRKGDPVMFATDEFVRHGVTQDALAGLKPAFDKAG 240 Query: 241 TVTAANASGLNDGAAAVVVMSAAKAKELGLTPLATIKSYANAGVDPKVMGMGPVPASKRA 300 +VTAANASGLNDGAAAVVVMSAAKAKELGLTPLATI++Y AGVDPKVMGMGPVPASKR Sbjct: 241 SVTAANASGLNDGAAAVVVMSAAKAKELGLTPLATIRAYGTAGVDPKVMGMGPVPASKRC 300 Query: 301 LSRAEWTPQDLDLMEINEAFAAQALAVHQQMGWDTSKVNVNGGAIAIGHPIGASGCRILV 360 LSRA W+ ++LDLMEINEAFAAQALAVH+QMGWDTSKVNVNGGAIAIGHPIGASGCRILV Sbjct: 301 LSRAGWSVEELDLMEINEAFAAQALAVHKQMGWDTSKVNVNGGAIAIGHPIGASGCRILV 360 Query: 361 TLLHEMKRRDAKKGLASLCIGGGMGVALAVERK 393 TLLHEMKRRDA KGLASLCIGGGMGVALAVERK Sbjct: 361 TLLHEMKRRDAHKGLASLCIGGGMGVALAVERK 393 Lambda K H 0.315 0.131 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 646 Number of extensions: 24 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 393 Length of database: 393 Length adjustment: 31 Effective length of query: 362 Effective length of database: 362 Effective search space: 131044 Effective search space used: 131044 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate RR42_RS07610 RR42_RS07610 (acetyl-CoA acetyltransferase)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))
../bin/blast/fastacmd -i /tmp/list.9947.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9947.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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