Align dihydrolipoyl dehydrogenase; EC 1.8.1.4 (characterized)
to candidate RR42_RS12930 RR42_RS12930 dihydrolipoamide dehydrogenase
Query= CharProtDB::CH_015561 (478 letters) >FitnessBrowser__Cup4G11:RR42_RS12930 Length = 478 Score = 494 bits (1272), Expect = e-144 Identities = 262/473 (55%), Positives = 340/473 (71%), Gaps = 8/473 (1%) Query: 1 MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIE--KYTDAEGKLALGGTCLNVGCIPSK 58 M+++FDV+VIGAGPGGY+AAI+A QLGL AC E Y D + + LGGTCLNVGCIPSK Sbjct: 1 MSKQFDVLVIGAGPGGYIAAIRAGQLGLNVACCEGNAYDDPKDEPRLGGTCLNVGCIPSK 60 Query: 59 ALLDSSWKYKEAKESFNVHGISTGEVKMDVAAMVGRKAGIVKNLTGGVATLFKANGVTSI 118 ALL SS +++ + HGI+ G+VK+DVA M+ RK IV +T G+ LF+ N VT + Sbjct: 61 ALLASSEEFENVQHHLGDHGITVGDVKVDVAKMLKRKDDIVGKMTKGIEFLFRKNKVTLL 120 Query: 119 QGHGKLLA----GKKVEVTKADGTTEVIEAENVILASGSRPIDIPPAPVDQNVIVDSTGA 174 +G+GK + G +VE+ GT EV+ A+ VI+A+GS+ +P VD ++ D+ GA Sbjct: 121 KGYGKFVGKTAEGFQVEIAGKAGT-EVVTAKQVIVATGSKARHLPGIAVDNVLVSDNEGA 179 Query: 175 LEFQAVPKRLGVIGAGVIGLELGSVWARLGAEVTVLEALDTFLMAADTAVSKEAQKTLTK 234 L+F VPK+LGVIGAGVIGLELGSVW RLGAEVTVLEAL +FL AAD V+KEAQK LTK Sbjct: 180 LKFAGVPKKLGVIGAGVIGLELGSVWRRLGAEVTVLEALPSFLGAADEGVAKEAQKLLTK 239 Query: 235 QGLDIKLGARVTGSKVNGNEVEVTYTNAEGE-QKITFDKLIVAVGRRPVTTDLLAADSGV 293 QGL LG +V K + V V+YT+ +G Q + D+LIV+VGR P T +L G+ Sbjct: 240 QGLKFSLGVKVNEVKTGKDNVTVSYTDKDGAAQTLEVDRLIVSVGRVPNTDNLGLDAIGL 299 Query: 294 TIDERGYIFVDDYCATSVPGVYAIGDVVRGMMLAHKASEEGIMVVERIKGHKAQMNYDLI 353 D+RG+I VDD+CATSVPG++AIGDVVRG MLAHKA +EG+ V ERI G K ++Y+ I Sbjct: 300 AADQRGFIEVDDHCATSVPGLWAIGDVVRGPMLAHKAEDEGVAVAERIAGQKPHIDYNCI 359 Query: 354 PSVIYTHPEIAWVGKTEQALKAEGVEVNVGTFPFAASGRAMAANDTGGFVKVIADAKTDR 413 P VIYT PEIAWVGKTEQ LKAEG E G FPF A+GRA+ + GFVK++ADAKTD Sbjct: 360 PWVIYTFPEIAWVGKTEQQLKAEGREYKSGQFPFMANGRALGMGHSEGFVKMLADAKTDE 419 Query: 414 VLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFSHPTLSEALHEAALAVN 466 +LGVHV+ +A++L+ + +AMEF ++ED+G HP++SE + EAALAV+ Sbjct: 420 ILGVHVVAANASDLIAEAVVAMEFKAASEDIGRTCHPHPSMSEVMREAALAVD 472 Lambda K H 0.316 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 714 Number of extensions: 33 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 478 Length of database: 478 Length adjustment: 34 Effective length of query: 444 Effective length of database: 444 Effective search space: 197136 Effective search space used: 197136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate RR42_RS12930 RR42_RS12930 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.13686.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13686.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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