Align acetoacetate-CoA ligase (EC 6.2.1.16) (characterized)
to candidate RR42_RS15595 RR42_RS15595 acetoacetyl-CoA synthetase
Query= BRENDA::D6EQU8 (658 letters) >FitnessBrowser__Cup4G11:RR42_RS15595 Length = 678 Score = 640 bits (1652), Expect = 0.0 Identities = 315/666 (47%), Positives = 426/666 (63%), Gaps = 17/666 (2%) Query: 4 ENPQPLWQPDAQRIAQARITRFQAWAAEHHGAPAEGGYAALHRWSVDELDTFWKAVTEWF 63 E Q W P +RI F W G A Y AL +WSV +L+ FW A+ +F Sbjct: 5 EEGQLRWTPSQAFRDGSRIAHFMRWLESERGL-AFADYGALWQWSVTDLEAFWDAIRAYF 63 Query: 64 DVRFSTPYARVLGDRTMPGAQWFPGATLNYAEHALRAAGTRP--DEPALLYVDETHEPAP 121 D+RF TP RVLG MPGA+WF GA+LNY + R AG+ + A+ Y E+ Sbjct: 64 DLRFDTPAERVLGSAQMPGARWFEGASLNYVQQVFRHAGSGAARERTAIRYAGESIAVTD 123 Query: 122 VTWAELRRQVASLAAELRALGVRPGDRVSGYLPNIPQAVVALLATAAVGGVWTSCAPDFG 181 ++W L +QVASLA LR +GV GDRV+GYLPNIP VVA LATA++G +W+ CAPD G Sbjct: 124 LSWDVLEQQVASLAHALRGMGVARGDRVAGYLPNIPATVVAFLATASLGAIWSGCAPDMG 183 Query: 182 ARSVLDRFQQVEPVVLFTVDGYRYGGKEHDRRDTVAELRRELPTLRAVIHIPLLGTEA-- 239 +V DRF+Q+EP VL VDGYRYGGK +DR +A+L LP+L ++ +P T+A Sbjct: 184 QVAVSDRFRQIEPKVLIAVDGYRYGGKAYDRAPVLADLAAALPSLTDLVLVPGEHTDAHA 243 Query: 240 -PDGTL--------DWETLTAADAEPVYEQVPFDHPLWVLYSSGTTGLPKAIVQSQGGIL 290 P+ W+ + A E VPFDHPLW++YSSGTTG+PK IV GGI+ Sbjct: 244 APNAIALPANVRRHAWQAVLAHRVPLAIESVPFDHPLWIVYSSGTTGMPKPIVHGHGGIV 303 Query: 291 VEHLKQLGLHCDLGPGDRFFWYTSTGWMMWNFLVSGLLTGTTIVLYDGSPGFPATDAQWR 350 +E LK + H +LGP D F WY+S+GW+MWN ++GLL G+TI LYDG+P +P WR Sbjct: 304 IEQLKLMAFHNNLGPDDVFHWYSSSGWIMWNAQIAGLLLGSTIALYDGNPAWPDAGVLWR 363 Query: 351 IAERTGATLFGTSAAYVMACRKAGVHPARDLDLSAIQCVATTGSPLPPDGFRWLHDEFAA 410 + T FG AA+ A KAG+ PAR DLS ++ + +TGSPLP + + W++ +A Sbjct: 364 FVDAARVTAFGAGAAFFTAGMKAGIEPARVADLSRLRALGSTGSPLPAEAYDWIYRHVSA 423 Query: 411 GGADLWIASVSGGTDVCSCFAGAVPTLPVHIGELQAPGLGTDLQSWDPSGDPLTDEVGEL 470 D+W+A +SGGTD F P LPV+ GE+Q LG ++++D +G+ L EVGEL Sbjct: 424 ---DIWLAPMSGGTDFAGSFVAGCPILPVYSGEMQCRCLGAKVEAFDEAGNALVGEVGEL 480 Query: 471 VVTNPMPSMPIRFWNDPDGSRYHDSYFDTYPGVWRHGDWITLTSRGSVVIHGRSDSTLNR 530 V T PMPSMP+ W D +G RY DSYFDTYPGVWRHGDWI +T+ G +I+GRSD+T+NR Sbjct: 481 VCTAPMPSMPLFLWGDTNGQRYRDSYFDTYPGVWRHGDWIKITAHGGAIIYGRSDATINR 540 Query: 531 QGVRMGSADIYEAVERLPEIRESLVIGIEQPDGGYWMPLFVHLAPGATLDDALLDRIKRT 590 G+RMG++++Y VE LPE+ +S+V+ +E +MPLFV L G LDDAL D ++ Sbjct: 541 HGIRMGTSELYRVVEDLPEVLDSMVVDLEYLGRDSYMPLFVVLREGMVLDDALRDTMRAR 600 Query: 591 IRVNLSPRHVPDEVIEVPGIPHTLTGKRIEVPVKRLLQGTPLDKAVNPGSIDNLDLLHFY 650 IR LS RHVP+E+++VPG+P TL+GK++EVP+K+LL G DK N ++ N + L +Y Sbjct: 601 IRSALSSRHVPNEILQVPGVPRTLSGKKMEVPIKKLLLGHAPDKIANRDAMANPETLDWY 660 Query: 651 EELARK 656 A + Sbjct: 661 FAYAER 666 Lambda K H 0.320 0.138 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1482 Number of extensions: 71 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 658 Length of database: 678 Length adjustment: 38 Effective length of query: 620 Effective length of database: 640 Effective search space: 396800 Effective search space used: 396800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.4 bits)
Align candidate RR42_RS15595 RR42_RS15595 (acetoacetyl-CoA synthetase)
to HMM TIGR01217 (acetoacetate-CoA ligase (EC 6.2.1.16))
../bin/blast/fastacmd -i /tmp/list.1307.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1307.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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