Align Benzoyl-CoA-dihydrodiol lyase; EC 4.1.2.44 (characterized)
to candidate RR42_RS35130 RR42_RS35130 benzoyl-CoA-dihydrodiol lyase
Query= SwissProt::Q84HH6 (555 letters) >FitnessBrowser__Cup4G11:RR42_RS35130 Length = 552 Score = 749 bits (1933), Expect = 0.0 Identities = 371/550 (67%), Positives = 439/550 (79%), Gaps = 5/550 (0%) Query: 10 AELVDYRTEPSKYRHWSLATDGEIATLTLNIDEDGGIRPGYKLKLNSYDLGVDIELHDAL 69 A V+Y+T+PS+Y+H L DG IATL ++IDE+ G+RPGYKLKLNSYDLGVDIEL+DA+ Sbjct: 4 APRVEYQTDPSQYKHLKLTFDGPIATLAVDIDENAGLRPGYKLKLNSYDLGVDIELNDAV 63 Query: 70 QRVRFEHPEVRTVVVTSGKPKIFCSGANIYMLGLSTHAWKVNFCKFTNETRNGIEDSSQY 129 R+RFEHPEVRTVVVTSGK K+FCSGANI+MLG+S+H+WKVNFCKFTNETRNG+EDSS++ Sbjct: 64 NRIRFEHPEVRTVVVTSGKDKVFCSGANIFMLGVSSHSWKVNFCKFTNETRNGLEDSSKH 123 Query: 130 SGLKFLAACNGTTAGGGYELALACDEIVLVDDRNSSVSLPEVPLLGVLPGTGGLTRVTDK 189 SGLKFLAA NG AGGGYELALACDEI+LVDDR+S+VSLPEVPLLGVLPGTGGLTRVTDK Sbjct: 124 SGLKFLAAVNGACAGGGYELALACDEIILVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDK 183 Query: 190 RRVRRDHADIFCTISEGVRGQRAKDWRLVDDVVKQQQFAEHIQARAKALAQTSDRPAGAK 249 R VR D ADIFCT +EGVRGQRAKDWRLVDD+ K FA+ +Q RA+ALA SDRPA A Sbjct: 184 RHVRHDLADIFCTTTEGVRGQRAKDWRLVDDIAKPAVFAQKVQERAQALAALSDRPANAS 243 Query: 250 GVKLTTLERTVDEKGYHYEFVDATIDADGRTVTLTVRAPAAVTAKTAAEIEAQGIKWWPL 309 GV LT L RT++ Y +V ID GR T TV+ P+A + A I G W+PL Sbjct: 244 GVALTPLARTLETDALRYTYVTVEIDRVGRKATFTVKGPSATQPTSVAAIAEAGAAWYPL 303 Query: 310 QMARELDDAILNLRTNHLDVGLWQLRTEGDAQVVLDIDATIDANRDNWFVRETIGMLRRT 369 Q+AREL+DAIL++RTN LD+G W ++TEGDA VL +DAT+ AN+D+W VRETIG+LRRT Sbjct: 304 QLARELEDAILSMRTNELDIGTWLIKTEGDAANVLAMDATLLANQDHWLVRETIGLLRRT 363 Query: 370 LARIDVSSRSLYALIEPGSCFAGTLLEIALAADRSYML----DAAEAKNVVGLSAMNFGT 425 +R+DVSSRSL+ALIEPGSCFAGT LE+ALA DRSY L D A A + ++ NFG Sbjct: 364 FSRLDVSSRSLFALIEPGSCFAGTFLELALACDRSYHLALPDDEARAPRIT-VAETNFGL 422 Query: 426 FPMVNGLSRIDARFYQEEAPVAAVKAKQGSLLSPAEAMELGLVTAIPDDLDWAEEVRIAI 485 +PMV G SR+ RFY E+ + AV+AK G L A +GLVTA PDD+DW +EVRIA+ Sbjct: 423 YPMVTGQSRLGRRFYDEQPALDAVRAKAGQPLDADAAFAVGLVTANPDDIDWTDEVRIAL 482 Query: 486 EERAALSPDALTGLEANLRFGPVETMNTRIFGRLSAWQNWIFNRPNAVGENGALKLFGSG 545 EERAA+SPDALTG+EANLRF E M TRIFGRL+AWQNWIF RPNAVGE GALK++G G Sbjct: 483 EERAAMSPDALTGMEANLRFNGQENMFTRIFGRLTAWQNWIFQRPNAVGEKGALKVYGKG 542 Query: 546 KKAQFDWNRV 555 KA FDWNRV Sbjct: 543 DKAAFDWNRV 552 Lambda K H 0.318 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 830 Number of extensions: 28 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 555 Length of database: 552 Length adjustment: 36 Effective length of query: 519 Effective length of database: 516 Effective search space: 267804 Effective search space used: 267804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate RR42_RS35130 RR42_RS35130 (benzoyl-CoA-dihydrodiol lyase)
to HMM TIGR03222 (boxC: benzoyl-CoA-dihydrodiol lyase (EC 4.1.2.44))
../bin/blast/fastacmd -i /tmp/list.3982.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3982.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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