Align Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 (characterized)
to candidate RR42_RS09905 RR42_RS09905 fumarylacetoacetase
Query= SwissProt::P25093 (419 letters) >FitnessBrowser__Cup4G11:RR42_RS09905 Length = 437 Score = 338 bits (868), Expect = 1e-97 Identities = 191/427 (44%), Positives = 254/427 (59%), Gaps = 25/427 (5%) Query: 7 AEDSDFPIQNLPYGVFSTQSNPKP-RIGVAIGDQILDLSVIKHLFTGPVL----SKHQHV 61 A DFP+QNLP VF + + + R GVAIGDQI+DL ++ L P L ++ Sbjct: 20 AAGCDFPLQNLPLSVFRRKGSTEAWRGGVAIGDQIVDLGALQSL---PGLQDSAAEAVRA 76 Query: 62 FDETTLNSFMGLGQAAWKEARASLQNLLSASQAQLRDDKELRQRAFTSQASATMHLPATI 121 TLN + LG +W+ R L LL + + R +E A Q A +P I Sbjct: 77 AAAPTLNGLLELGPESWRALRHGLYGLLQSGSSLARQVRE----ALVPQLDAEHAVPVRI 132 Query: 122 GDYTDFYSSLQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSVVVSGTPIRRPMGQMR 181 GDYTDFY+SL HA N F + N PN+ LP+ YHGR SS+ VSG + RP GQ R Sbjct: 133 GDYTDFYTSLDHAVNCCRQFGIEVN---PNFDWLPIAYHGRVSSIDVSGQQVYRPAGQYR 189 Query: 182 PDNSKPPVYGASKRLDMELEMAFFVGPGNRFGEPIPISKAQEHIFGMVLMNDWSARDIQQ 241 D S PVYG +RLD ELE+ +G GN G PIP++ AQ+HIFG+ L+NDWSARDIQ Sbjct: 190 TDPSSAPVYGPCQRLDYELEVGAVIGIGNARGTPIPLANAQQHIFGLCLLNDWSARDIQT 249 Query: 242 WEYVPLGPFLGKSFGTTISPWVVPMDALMPFVV--PNPKQDPKPLPYL---CHSQPYTFD 296 WE PLGPFL K+F TT+SPW+V ++AL+P+ + P+PL YL ++ FD Sbjct: 250 WEMQPLGPFLAKNFATTLSPWIVTLEALLPYRTGWTRAPERPQPLDYLRSADNAAAGAFD 309 Query: 297 INLSVA-LKGEGMSQAA---TICRSNFKHMYWTILQQLTHHSVNGCNLRPGDLLASGTIS 352 I L V+ L +Q + R++F+H YWT+ Q + HH+V GCNL+PGDLL SGT+S Sbjct: 310 IQLEVSILSARRQAQGRPPHKLTRTSFQHQYWTLGQMIAHHTVGGCNLQPGDLLGSGTVS 369 Query: 353 GSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGY-RVGFGQCAGK 411 G +P G+++EL+ GT D+G G+ R FL DGD V+ G C+ + Y R+GFG Sbjct: 370 GPNPWEAGALIELTVSGTHPADIGDGEQRGFLKDGDTVVFRGWCEREDYARIGFGVNYAT 429 Query: 412 VLPALSP 418 VLPA P Sbjct: 430 VLPAPGP 436 Lambda K H 0.320 0.136 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 582 Number of extensions: 29 Number of successful extensions: 7 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 419 Length of database: 437 Length adjustment: 32 Effective length of query: 387 Effective length of database: 405 Effective search space: 156735 Effective search space used: 156735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate RR42_RS09905 RR42_RS09905 (fumarylacetoacetase)
to HMM TIGR01266 (fahA: fumarylacetoacetase (EC 3.7.1.2))
../bin/blast/fastacmd -i /tmp/list.9876.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9876.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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