Align 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) (characterized)
to candidate RR42_RS26160 RR42_RS26160 4-aminobutyrate aminotransferase
Query= BRENDA::Q0K2K2 (423 letters) >FitnessBrowser__Cup4G11:RR42_RS26160 Length = 424 Score = 719 bits (1856), Expect = 0.0 Identities = 354/420 (84%), Positives = 383/420 (91%) Query: 3 MKNLELNQRRTLATPRGVGVMCDFYADRAENATLWDVEGRAYTDFAAGIAVLNTGHRHPR 62 MKNLELNQRR LATPRGVGVMCDFYADRAENATLWDVEGR YTDFA GIAVLNTGHRHPR Sbjct: 1 MKNLELNQRRALATPRGVGVMCDFYADRAENATLWDVEGRQYTDFACGIAVLNTGHRHPR 60 Query: 63 VMQAIAAQLERFTHTAYQIVPYQGYVTLAERINALVPIQGLNKTALFTTGAEAVENAIKI 122 VMQA+ AQLERFTHTAYQIVPY+ YV LAERINALVPI GL KTALFTTGAEAVENA+KI Sbjct: 61 VMQAVIAQLERFTHTAYQIVPYESYVALAERINALVPIDGLKKTALFTTGAEAVENAVKI 120 Query: 123 ARAHTGRPGVIAFSGAFHGRTLLGMALTGKVAPYKIGFGPFPSDIYHAPFPSALHGVSTE 182 ARAHTGRPGVIAFSG FHGRTLLGMALTGKVAPYK+GFGPFPSDIYHAPFP LHGVSTE Sbjct: 121 ARAHTGRPGVIAFSGGFHGRTLLGMALTGKVAPYKVGFGPFPSDIYHAPFPCDLHGVSTE 180 Query: 183 RALQALEGLFKTDIDPARVAAIIVEPVQGEGGFQAAPADFMRGLRAVCDQHGIVLIADEV 242 +++QALE LFKTDIDP RVAAII+EPVQGEGGF AP DFM+ LRA+CD+HGI+LIADEV Sbjct: 181 QSIQALESLFKTDIDPQRVAAIIIEPVQGEGGFHPAPVDFMQTLRALCDKHGILLIADEV 240 Query: 243 QTGFGRTGKMFAMSHHDVEPDLITMAKSLAGGMPLSAVSGRAAIMDAPLPGGLGGTYAGN 302 QTGFGRTGK+FAMSH+ V PDLITMAKSLAGGMPLSAV GRA+IMDAPLPGGLGGTYAGN Sbjct: 241 QTGFGRTGKLFAMSHYPVAPDLITMAKSLAGGMPLSAVCGRASIMDAPLPGGLGGTYAGN 300 Query: 303 PLAVAAAHAVIDVIEEEKLCERSASLGQQLREHLLAQRKHCPAMAEVRGLGSMVAAEFCD 362 PLAVAAAHAVI+ IE+E+LCER+ +LG+QL+ L + CP +A++RGLGSMVA EF D Sbjct: 301 PLAVAAAHAVIETIEQERLCERATALGKQLKAALQQASQTCPGIADIRGLGSMVAVEFHD 360 Query: 363 PATGQPSAEHAKRVQTRALEAGLVLLTCGTYGNVIRFLYPLTIPQAQFDAALAVLTQALA 422 PATGQPSAE AKRVQ RA+EAGL+LLTCGTYGN IRFLYPLTIPQAQFDAAL VLT+ LA Sbjct: 361 PATGQPSAELAKRVQLRAMEAGLILLTCGTYGNTIRFLYPLTIPQAQFDAALVVLTKVLA 420 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 718 Number of extensions: 21 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 423 Length of database: 424 Length adjustment: 32 Effective length of query: 391 Effective length of database: 392 Effective search space: 153272 Effective search space used: 153272 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (24.3 bits)
Align candidate RR42_RS26160 RR42_RS26160 (4-aminobutyrate aminotransferase)
to HMM TIGR00700 (gabT: 4-aminobutyrate transaminase (EC 2.6.1.19))
../bin/blast/fastacmd -i /tmp/list.27465.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27465.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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