Align Acetaldehyde dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; EC 1.2.1.10 (characterized)
to candidate RR42_RS32630 RR42_RS32630 acetaldehyde dehydrogenase
Query= SwissProt::Q52060 (312 letters) >FitnessBrowser__Cup4G11:RR42_RS32630 Length = 314 Score = 456 bits (1172), Expect = e-133 Identities = 237/309 (76%), Positives = 267/309 (86%), Gaps = 2/309 (0%) Query: 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGL 63 K KVAIIGSGNIGTDLMIKV+RN + LEMGAMVGIDAASDGLARA R+GV TT G+EGL Sbjct: 8 KHKVAIIGSGNIGTDLMIKVMRNGRQLEMGAMVGIDAASDGLARAARLGVPTTAEGIEGL 67 Query: 64 IKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLG 123 +++ F DI FDATSA AH + +L+Q GI++IDLTPAAIGPY VPVVNL++ LG Sbjct: 68 VRMAGFGDIRIAFDATSAGAHAHHNQILQQH--GIQVIDLTPAAIGPYVVPVVNLDQQLG 125 Query: 124 KLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSKAI 183 N+NMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTS+AI Sbjct: 126 ASNINMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSQAI 185 Query: 184 EVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAVQAYVPGYRL 243 +GGAA+GKAII++NPAEPPL+MRDTV+ LS AD+AA+ ASV M +AVQAYVPGYRL Sbjct: 186 CSVGGAARGKAIIVLNPAEPPLMMRDTVFTLSEDADEAAIEASVQAMAKAVQAYVPGYRL 245 Query: 244 KQQVQFDVIPESAPLNIPGLGRFSGLKTSVFLEVEGAAHYLPAYAGNLDIMTSAALATAE 303 KQ+VQF+ I SAPLNIPGLG SGLKTS+FLEVEGAAHYLPAYAGNLDIMTSAALA AE Sbjct: 246 KQRVQFERIDPSAPLNIPGLGLMSGLKTSIFLEVEGAAHYLPAYAGNLDIMTSAALACAE 305 Query: 304 RMAQSMLNA 312 R+AQ+ L A Sbjct: 306 RLAQTRLAA 314 Lambda K H 0.317 0.132 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 320 Number of extensions: 3 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 312 Length of database: 314 Length adjustment: 27 Effective length of query: 285 Effective length of database: 287 Effective search space: 81795 Effective search space used: 81795 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate RR42_RS32630 RR42_RS32630 (acetaldehyde dehydrogenase)
to HMM TIGR03215 (acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10))
../bin/blast/fastacmd -i /tmp/list.4069.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4069.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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