Align 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) (characterized)
to candidate RR42_RS27900 RR42_RS27900 4-hyroxy-2-oxovalerate aldolase
Query= metacyc::MONOMER-11384 (352 letters) >FitnessBrowser__Cup4G11:RR42_RS27900 Length = 338 Score = 622 bits (1604), Expect = 0.0 Identities = 306/333 (91%), Positives = 322/333 (96%) Query: 3 QQKLYISDVTLRDGSHAIRHQYTVEQVKQIARALDDAKVDSIEVAHGDGLQGGSFNYGFG 62 Q+K+YISDVTLRDGSHA+RHQY+VEQ +QIA+ALDDAKVDSIEVAHGDGLQG SFNYGFG Sbjct: 4 QKKIYISDVTLRDGSHAVRHQYSVEQARQIAKALDDAKVDSIEVAHGDGLQGSSFNYGFG 63 Query: 63 AHTDLEWIEAAASVVKHAKIATLLLPGIGTVHDLKAVYEAGVRVVRVATHCTEADISRQH 122 AHTDLEWIEA ASVVKHAKIATLLLPGIGTVHDLKA Y+AG R+VRVATHCTEAD+SRQH Sbjct: 64 AHTDLEWIEAVASVVKHAKIATLLLPGIGTVHDLKAAYDAGARIVRVATHCTEADVSRQH 123 Query: 123 IEYARHLGMEAVGFLMMSHMTTPQHLAQQAKLMESYGATVCYVVDSGGALSMNDVRDRFR 182 IEYARHLGMEAVGFLMMSHMTTPQ+LA QAKLMESYGAT CYVVDSGGAL+MNDVRDRFR Sbjct: 124 IEYARHLGMEAVGFLMMSHMTTPQNLAAQAKLMESYGATCCYVVDSGGALTMNDVRDRFR 183 Query: 183 AFKDVLKPETQTGMHAHHNLSLGVANSIVAVENGCDRVDASLAGMGAGAGNAPLEVFIAA 242 AFK VLKPETQTGMHAHHNLSLGVANSIVAVE GCDR+DASLAGMGAGAGNAPLEVFIAA Sbjct: 184 AFKAVLKPETQTGMHAHHNLSLGVANSIVAVEEGCDRIDASLAGMGAGAGNAPLEVFIAA 243 Query: 243 AERMGWNHGTDLYKLMDAADDLVRPLQDRPVRVDRETLALGYAGVYSSFLRHSEMAASKY 302 AERMGW+HG DLYKLMDAADD+VRPLQDRPVRVDRETLALGYAGVYSSFLRHSE AASKY Sbjct: 244 AERMGWDHGCDLYKLMDAADDIVRPLQDRPVRVDRETLALGYAGVYSSFLRHSEAAASKY 303 Query: 303 GLKTVDILVELGRRRMVGGQEDMIIDVALDLLK 335 GLKTVD+LVELGRRRMVGGQEDMI+DVALDLLK Sbjct: 304 GLKTVDVLVELGRRRMVGGQEDMIVDVALDLLK 336 Lambda K H 0.319 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 527 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 352 Length of database: 338 Length adjustment: 29 Effective length of query: 323 Effective length of database: 309 Effective search space: 99807 Effective search space used: 99807 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate RR42_RS27900 RR42_RS27900 (4-hyroxy-2-oxovalerate aldolase)
to HMM TIGR03217 (dmpG: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39))
../bin/blast/fastacmd -i /tmp/list.10517.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10517.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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