Align 3-oxoadipate enol-lactonase (EC 3.1.1.24) (characterized)
to candidate RR42_RS00755 RR42_RS00755 3-oxoadipate enol-lactonase
Query= BRENDA::Q13KT2 (263 letters) >FitnessBrowser__Cup4G11:RR42_RS00755 Length = 280 Score = 180 bits (457), Expect = 3e-50 Identities = 99/257 (38%), Positives = 146/257 (56%), Gaps = 6/257 (2%) Query: 6 VNGTELHYRIDGERHGNAPWIVLSNSLGTDLSMWAPQVAALSKHFRVLRYDTRGHGHSEA 65 V LH RIDG G+ PW+VL+++LG + ++W L+ +RVLRYD RGHG S+A Sbjct: 15 VGDISLHVRIDG---GDGPWVVLAHALGANHTLWDATARHLAPRYRVLRYDLRGHGQSDA 71 Query: 66 PKGPYTIEQLTGDVLGLMDTLKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAAR 125 P G Y++ +L D LMD +++ A+F G+S+GG+ G A RH +R+ + L T R Sbjct: 72 PIGAYSMIRLADDAACLMDVMEVPAAHFVGVSVGGMIGQTAAVRHPERLLSLTLAATVNR 131 Query: 126 --IGSPEVWVPRAVKARTEGMHALADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGY 183 + +W R GM +AD+ + RWF+A + P +A +R++ + T GY Sbjct: 132 TPLDVHPMWHERIGHVEAHGMAGVADSTMQRWFSAAFRGAHPQEVARVREMLLATPVHGY 191 Query: 184 ASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQGRELAQAIAGARYVEL-DASHI 242 C+AI A DL I P LV++G DL A PA RE+A AI GAR L A+H+ Sbjct: 192 VGTCQAIMAFDLAGAISRIHCPTLVVAGEEDLGAPPAMAREIAGAIPGARLEILPHAAHL 251 Query: 243 SNIERADAFTKTVVDFL 259 ++IE+A+ F + FL Sbjct: 252 AHIEQAERFHAVLDAFL 268 Lambda K H 0.320 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 232 Number of extensions: 11 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 263 Length of database: 280 Length adjustment: 25 Effective length of query: 238 Effective length of database: 255 Effective search space: 60690 Effective search space used: 60690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate RR42_RS00755 RR42_RS00755 (3-oxoadipate enol-lactonase)
to HMM TIGR02427 (pcaD: 3-oxoadipate enol-lactonase (EC 3.1.1.24))
../bin/blast/fastacmd -i /tmp/list.25488.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25488.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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