Align β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) (characterized)
to candidate RR42_RS35915 RR42_RS35915 beta-ketoadipyl CoA thiolase
Query= metacyc::MONOMER-15952 (401 letters) >FitnessBrowser__Cup4G11:RR42_RS35915 Length = 400 Score = 585 bits (1507), Expect = e-171 Identities = 292/401 (72%), Positives = 339/401 (84%), Gaps = 1/401 (0%) Query: 1 MNEALIIDAVRTPIGRYAGALASVRADDLGAIPLKALIARHPQLDWSAVDDVIYGCANQA 60 M EA I DA+RTPIGRYAG+L+ VR DDLGA+PLKAL+AR+P LDWSA+DDVIYG ANQA Sbjct: 1 MTEAFICDAIRTPIGRYAGSLSGVRPDDLGAVPLKALMARNPNLDWSAIDDVIYGNANQA 60 Query: 61 GEDNRNVARMAALLAGLPVSVPGTTLNRLCGSGLDAVGSAARALRCGEAGLMLAGGVESM 120 GEDNRNVARM+ LLAGLP SVPG T+NRLCGSG+DA G+AARA++ GEAGLMLAGGVESM Sbjct: 61 GEDNRNVARMSLLLAGLPQSVPGATINRLCGSGMDATGTAARAIKSGEAGLMLAGGVESM 120 Query: 121 SRAPFVMGKSEQAFGRSAEIFDTTIGWRFVNKLMQQGFGIDSMPETAENVAAQFNISRAD 180 SRAPFVMGK+ AF R A+IFDTTIGWRF+N M+ +G+DSMPETAENVA + ISR D Sbjct: 121 SRAPFVMGKATSAFSRDAQIFDTTIGWRFINPAMRAAYGVDSMPETAENVATDYKISRED 180 Query: 181 QDAFALRSQHKAAAAIANGRLAKEIVAVEIAQRKGPAKIVEHDEHPRGDTTLEQLAKLGT 240 QD ALRSQ KA+ A A+G LA+EI AV IAQ+KG +VE DEHPR T++E L KL Sbjct: 181 QDLMALRSQEKASRAQADGTLAQEITAVTIAQKKGDPLVVERDEHPRA-TSMEALGKLRG 239 Query: 241 PFRQGGSVTAGNASGVNDGACALLLASSEAAQRHGLKARARVVGMATAGVEPRIMGIGPV 300 R G+VTAGNASGVNDGACA+LLAS AA++HGL +AR+VGMATAGV PR+MGIGP Sbjct: 240 VVRADGTVTAGNASGVNDGACAILLASEAAARQHGLTPKARIVGMATAGVAPRVMGIGPA 299 Query: 301 PATRKVLELTGLALADMDVIELNEAFAAQGLAVLRELGLADDDERVNPNGGAIALGHPLG 360 PA++K+L+ G+ + MDVIELNEAFAAQGLAVLRELG+ADDD RVNPNGGAIALGHPLG Sbjct: 300 PASQKLLKQLGMTIDQMDVIELNEAFAAQGLAVLRELGVADDDARVNPNGGAIALGHPLG 359 Query: 361 MSGARLVTTALHELEERQGRYALCTMCIGVGQGIALIIERI 401 MSGARLVTTA+++L GRYALCTMCIGVGQGIA++IER+ Sbjct: 360 MSGARLVTTAMYQLHRTGGRYALCTMCIGVGQGIAMVIERV 400 Lambda K H 0.319 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 546 Number of extensions: 15 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 400 Length adjustment: 31 Effective length of query: 370 Effective length of database: 369 Effective search space: 136530 Effective search space used: 136530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate RR42_RS35915 RR42_RS35915 (beta-ketoadipyl CoA thiolase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))
../bin/blast/fastacmd -i /tmp/list.16353.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16353.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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