Align 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) (characterized)
to candidate RR42_RS32640 RR42_RS32640 4-oxalocrotonate decarboxylase
Query= metacyc::MONOMER-14737 (262 letters) >FitnessBrowser__Cup4G11:RR42_RS32640 Length = 262 Score = 370 bits (950), Expect = e-107 Identities = 180/262 (68%), Positives = 216/262 (82%) Query: 1 MKLDKNTLAQLAEHLENAELKAHDVTKITDDHPDMDWDDAYAIQDLIRARKESRGHKTLG 60 M L ++T QLAEHLE AEL V KITD HP+MDW+DAYAIQD IRARK++RG + G Sbjct: 1 MNLTQDTTRQLAEHLETAELNREPVRKITDTHPEMDWEDAYAIQDAIRARKQARGTRIAG 60 Query: 61 LKCGLTSYAKMKQMGVDTPVFGFVSDYMACAEGSDIKTSELIHPKVEAEICVVTKAPLKG 120 LK GLTS+AKM+QMGV PV+GF++DY AC +G I T+ LIHPKVEAEI V K PLKG Sbjct: 61 LKMGLTSFAKMRQMGVTDPVYGFLTDYGACMDGGAIDTASLIHPKVEAEIAFVLKHPLKG 120 Query: 121 PGCHVGAVMAAIDFVIPGVEIIDSRYRDFKFDLKSVIADNTSASRFVIGGRARRVEDLDL 180 PGCH+G V+AA DFV+P VE+IDSRY +F+FDLKSVIADNTS++RFV+GG R E +DL Sbjct: 121 PGCHIGDVLAATDFVLPAVEVIDSRYENFRFDLKSVIADNTSSARFVVGGTHRSAEGIDL 180 Query: 181 RTLGVVLEKNGQIVAMAAGAAVMGHPAAAIAALANHLGARGQEIPTGSFIMTGGVTEAIA 240 + LGVVLEKNG++VA AAGAAV+GHPA+++A LAN LGARG+E+P G+FIMTGGVTEAIA Sbjct: 181 KNLGVVLEKNGEVVATAAGAAVLGHPASSVAMLANMLGARGRELPAGTFIMTGGVTEAIA 240 Query: 241 VQAGDSVNVRFQDLGTVGMRFV 262 V AGDS+ VR+Q LGTV MRFV Sbjct: 241 VAAGDSITVRYQHLGTVSMRFV 262 Lambda K H 0.320 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 241 Number of extensions: 6 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 262 Length of database: 262 Length adjustment: 25 Effective length of query: 237 Effective length of database: 237 Effective search space: 56169 Effective search space used: 56169 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate RR42_RS32640 RR42_RS32640 (4-oxalocrotonate decarboxylase)
to HMM TIGR03218 (dmpH: 4-oxalocrotonate decarboxylase (EC 4.1.1.77))
../bin/blast/fastacmd -i /tmp/list.8548.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8548.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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