Align acetoacetate-CoA ligase (EC 6.2.1.16) (characterized)
to candidate RR42_RS10085 RR42_RS10085 acetoacetyl-CoA synthase
Query= BRENDA::Q9Z3R3 (650 letters) >FitnessBrowser__Cup4G11:RR42_RS10085 Length = 1020 Score = 441 bits (1134), Expect = e-128 Identities = 267/652 (40%), Positives = 346/652 (53%), Gaps = 25/652 (3%) Query: 6 PLWVPDREIVERSPMAEFIDWCGERFGRSFADYDAFHDWSVSERGAFWTAV--WEHCKVI 63 P++ E S M F G+ F DYD HD+SV E FW W H Sbjct: 10 PIYGSTSERAAASQMTAFTTALQAYTGQVFGDYDTLHDFSVREYRTFWQCFVQWSHGLAW 69 Query: 64 GESGEKALVDGDRMLDARFFPEARLNFAENLLRKTGSGD---ALIFRGEDKVSYRLTWDE 120 S E V GD ARFFP+ +LN+A+NLL + + AL D RLT E Sbjct: 70 SGSTEPVCV-GDECEHARFFPQVQLNYADNLLGQAVAAPDTPALTACHADGRRVRLTRGE 128 Query: 121 LRALVSRLQQALRAQGIGAGDRVAAMMPNMPETIALMLATASVGAIWSSCSPDFGEQGVL 180 LR V+RL AL G+ GDRV +M N + + LA ++GA S+ + + + +L Sbjct: 129 LRNRVARLAHALSELGLRDGDRVVGVMRNDADAVVAALAVTALGATLSTAAAEMSVETIL 188 Query: 181 DRFGQIAPKLFIVCDGYWYNGKRQDVDSKVRAVAKSLGAPTVIVPYAGDSAALAPTVEGG 240 DRF +AP+L + V +A +L + +V D L TV+ Sbjct: 189 DRFAPLAPRLLFAHVAEREFDTGMSLADNVADLAAALPSLQGVVRL--DDGTLPGTVKQR 246 Query: 241 V-TLADFIAGFQAGPLVFERLPFGHPLYILFSSGTTGVPKCIVHSAGGTLLQHLKEHRFH 299 + +L + I AG V+ R PF HPL+I+FSSGTTG PKCIVH AGG+LL+HLKEHR H Sbjct: 247 IYSLGELIDSGDAGSFVWRRFPFNHPLFIMFSSGTTGKPKCIVHGAGGSLLEHLKEHRLH 306 Query: 300 CGLRDGERLFYFTTCGWMMWNWLASGLAVGATLCLYDGSPFCPDGNVLFDYAAAERFAVF 359 C LR G+RL++ TTC WMMWNW S LA GA + YDG D L+ A ER VF Sbjct: 307 CDLRPGDRLYFHTTCAWMMWNWQLSALASGAEIVTYDGPISTVD--ALWRLVADERVTVF 364 Query: 360 GTSAKYIDAVRKGGFTPARTHDLSSLRLMTSTGSPLSPEGFSFVYEGIKPDVQLASISGG 419 GTS Y+ G P + DL +LR M STG+ L F +V + +KP + L SISGG Sbjct: 365 GTSPAYLKMCEDAGLVPGQQFDLGALRAMMSTGAVLFDAQFEWVRDHVKP-LPLQSISGG 423 Query: 420 TDIVSCFVLGNPLKPVWRGEIQGPGLGLAVDVWNDEGKPVRGEKGELVCTRAFPSMPVMF 479 TDI+ CFVLGNP P++ GE Q L L V W R GELVC FPS P+ F Sbjct: 424 TDILGCFVLGNPNLPIYAGEAQCKSLALDVQAWEQGAHTSR--IGELVCANPFPSRPLGF 481 Query: 480 WNDPDGAKYRAAYFDRFDNVWCHGDFAEWTPHGGIVIHGRSDATLNPGGVRIGTAEIYNQ 539 + D DG + AAYF R VW HGD E++P G +HGRSD LN G+ +G EIY Sbjct: 482 FGDMDGKGFHAAYFTRNPGVWTHGDRIEFSPEGTARLHGRSDGILNVRGINVGPGEIYRV 541 Query: 540 VEQMDEVAEALCIGQ-----------DWEDDVRVVLFVRLARGVELTEALTREIKNRIRS 588 + + ++ EAL + Q D R+VL + L GV LT AL ++ + Sbjct: 542 LSDIRDIREALVVEQRSCAAPPDRTHAERYDQRIVLLLVLQDGVALTGALATRVRRDLAR 601 Query: 589 GASPRHVPAKIIAVADIPRTKSGKIVELAVRDVVHGRPVKNKEALANPEALD 640 ASP HVP IIAV ++P T +GK+ E A R+ ++G PV N AL NP LD Sbjct: 602 RASPAHVPDLIIAVDELPVTHNGKLSEAAARNAINGLPVGNAAALRNPGCLD 653 Lambda K H 0.322 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1868 Number of extensions: 106 Number of successful extensions: 8 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 650 Length of database: 1020 Length adjustment: 41 Effective length of query: 609 Effective length of database: 979 Effective search space: 596211 Effective search space used: 596211 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (26.2 bits)
Align candidate RR42_RS10085 RR42_RS10085 (acetoacetyl-CoA synthase)
to HMM TIGR01217 (acetoacetate-CoA ligase (EC 6.2.1.16))
../bin/blast/fastacmd -i /tmp/list.10704.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10704.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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