Align Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (characterized)
to candidate RR42_RS25635 RR42_RS25635 methylmalonate-semialdehyde dehydrogenase
Query= reanno::pseudo1_N1B4:Pf1N1B4_1229 (505 letters) >FitnessBrowser__Cup4G11:RR42_RS25635 Length = 507 Score = 804 bits (2076), Expect = 0.0 Identities = 394/493 (79%), Positives = 440/493 (89%), Gaps = 1/493 (0%) Query: 13 KLLIDGEWVESQTTEWHDIVNPATQQVLAKVPFATAAEVDAAISAAHRAFQTWKLTPIGA 72 KLLIDG++VES + +W ++VNPATQQV+ +VPFAT EVDAAI++A RAF W+ TP+GA Sbjct: 16 KLLIDGKFVESDSNQWGNVVNPATQQVIGRVPFATVEEVDAAIASAQRAFLAWRNTPLGA 75 Query: 73 RMRIMLKLQALIREHSKRIAVVLSNEQGKTIADAEGDIFRGLEVVEHACSIGSLQMGEFA 132 R+R+MLK Q L+R + +RIA L+ EQGKT+ DA+GDIFRGLEVVEHACS+G+LQMGEFA Sbjct: 76 RLRVMLKFQDLVRRNMERIARTLTAEQGKTLPDAQGDIFRGLEVVEHACSVGTLQMGEFA 135 Query: 133 ENVAGGVDTYTLRQPIGVCAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSEQDPMSTML 192 ENVAGGVDTYTLRQPIGVCAGITPFNFP MIPLWMFPMAI CGNTFVLKPSEQDP+STM Sbjct: 136 ENVAGGVDTYTLRQPIGVCAGITPFNFPGMIPLWMFPMAIVCGNTFVLKPSEQDPLSTME 195 Query: 193 LVELAIEAGIPPGVLNVVHGGKDVVDALCTHKDIKAVSFVGSTAVGTHVYDLAGKHGKRV 252 LVELA+EAG+PPGVLNVVHGGK VVD LCTH D+KA+SFVGST VGTHVY+L KHGKRV Sbjct: 196 LVELAMEAGVPPGVLNVVHGGKTVVDMLCTHPDVKAISFVGSTHVGTHVYNLGSKHGKRV 255 Query: 253 QSMMGAKNHAVVLPDANREQALNALVGAGFGAAGQRCMATSVVVLVGAAKQWLPDLKALA 312 QSMMGAKNHAVVLPDANR+Q LNALVGAGFGAAGQRCMATSVVVLVG ++ WLP+L A A Sbjct: 256 QSMMGAKNHAVVLPDANRQQTLNALVGAGFGAAGQRCMATSVVVLVGQSRDWLPELVAKA 315 Query: 313 QKLKVNAGSEPGTDVGPVISKRAKARILDLIESGIKEGAKLELDGRDISVPGYEKGNFVG 372 + LKVNAG EPGTDVGPV+SK A ARI LIE G++ GA L LDGR++ VPGYE GNFVG Sbjct: 316 KLLKVNAGHEPGTDVGPVMSKAAHARITGLIEEGVQAGAALLLDGRNVKVPGYENGNFVG 375 Query: 373 PTLFSGVTPEMQIYTQEIFGPVLVVLEVDTLDQAIALVNANPFGNGTGLFTQSGAAARKF 432 PT+FSGV+P+M IYTQEIFGPV+VVLEVDTLD+AIALVN NP GNG GLFTQSGAAARKF Sbjct: 376 PTIFSGVSPDMSIYTQEIFGPVVVVLEVDTLDEAIALVNRNPMGNGVGLFTQSGAAARKF 435 Query: 433 QTEIDVGQVGINIPIPVPVPFFSFTGSRGSKLGDLGPYGKQVVQFYTQTKTVTARWFDDD 492 Q+EIDVGQVGINIPIPVPVP+FSFTGSRGSKLGDLGPYGKQVVQFYTQTKTVTARWFDD Sbjct: 436 QSEIDVGQVGINIPIPVPVPYFSFTGSRGSKLGDLGPYGKQVVQFYTQTKTVTARWFDDT 495 Query: 493 SVNDGVNTTIHLR 505 +GVNTTI LR Sbjct: 496 PA-EGVNTTIALR 507 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 834 Number of extensions: 25 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 1 Length of query: 505 Length of database: 507 Length adjustment: 34 Effective length of query: 471 Effective length of database: 473 Effective search space: 222783 Effective search space used: 222783 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate RR42_RS25635 RR42_RS25635 (methylmalonate-semialdehyde dehydrogenase)
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))
../bin/blast/fastacmd -i /tmp/list.7291.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7291.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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