Align 3-hydroxyisobutyrate dehydrogenase subunit (EC 1.1.1.31) (characterized)
to candidate RR42_RS24030 RR42_RS24030 3-hydroxyisobutyrate dehydrogenase
Query= metacyc::MONOMER-11664 (295 letters) >FitnessBrowser__Cup4G11:RR42_RS24030 Length = 298 Score = 405 bits (1041), Expect = e-118 Identities = 204/295 (69%), Positives = 237/295 (80%) Query: 1 MRIAFIGLGNMGAPMARNLIKAGHQLNLFDLNKTVLAELAELGGQISPSPKDAAANSELV 60 M IAFIGLGNMGAPMA NL+KAGH L +FDL+ +A G + SP++AAA ++LV Sbjct: 1 MEIAFIGLGNMGAPMAANLLKAGHALTVFDLDANAVAAALLAGATSAGSPREAAARADLV 60 Query: 61 ITMLPAAAHVRSVYLNDDGVLAGIRPGTPTVDCSTIDPQTARDVSKAAAAKGVDMGDAPV 120 ITMLPAAAHVR VYL +DGVLAG RPG P VDCSTIDP T R V++AAA++ DAPV Sbjct: 61 ITMLPAAAHVRQVYLGEDGVLAGARPGVPMVDCSTIDPATVRTVAEAAASQDSPFADAPV 120 Query: 121 SGGTGGAAAGTLTFMVGASAELFASLKPVLEQMGRNIVHCGEVGTGQIAKICNNLLLGIS 180 SGGTGGA AGTLTFMVGA LF ++PVL MGRN+V CG GTGQ+AKICNNLLLGIS Sbjct: 121 SGGTGGAQAGTLTFMVGADQPLFERIRPVLLAMGRNVVPCGAPGTGQVAKICNNLLLGIS 180 Query: 181 MIGVSEAMALGNALGIDTKVLAGIINSSTGRCWSSDTYNPWPGIIETAPASRGYTGGFGA 240 M+GVSEAMALG ALGID VLAGIIN+STGRCWSSD+YNP+PG+ APA+RGY GGF A Sbjct: 181 MMGVSEAMALGAALGIDPAVLAGIINTSTGRCWSSDSYNPYPGVQPAAPAARGYVGGFAA 240 Query: 241 ELMLKDLGLATEAARQAHQPVILGAVAQQLYQAMSLRGEGGKDFSAIVEGYRKKD 295 +LMLKDLGLAT+AARQAHQP+ +GA+AQQLYQ+MS +G G DFSA ++ Y K D Sbjct: 241 DLMLKDLGLATDAARQAHQPLWMGALAQQLYQSMSQQGMGRLDFSACLKLYEKPD 295 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 362 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 295 Length of database: 298 Length adjustment: 26 Effective length of query: 269 Effective length of database: 272 Effective search space: 73168 Effective search space used: 73168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate RR42_RS24030 RR42_RS24030 (3-hydroxyisobutyrate dehydrogenase)
to HMM TIGR01692 (mmsB: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31))
../bin/blast/fastacmd -i /tmp/list.4788.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4788.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.