Align phosphate acetyltransferase (EC 2.3.1.8) (characterized)
to candidate 3608428 Dshi_1825 phosphate acetyltransferase (RefSeq)
Query= BRENDA::Q5LMK3 (337 letters) >FitnessBrowser__Dino:3608428 Length = 341 Score = 333 bits (855), Expect = 3e-96 Identities = 183/327 (55%), Positives = 223/327 (68%), Gaps = 1/327 (0%) Query: 6 PIDLLLSDPPARRATVALSEGSDPRVVAGALAAHSAGIADVILVGQAAEIRAAL-KAQGA 64 P+ ++L++ +ALSEG DPRVVA A+ A +A V+LVG A I A L +A GA Sbjct: 3 PLQMILANAARSDRKIALSEGEDPRVVAAAVQARKQRVARVVLVGDRATIVARLAEAGGA 62 Query: 65 PADSLTIHDPDSSPLTAEFAAAYYGLRRHKGVSEAAALAAVRTPLVYAAMLVRGDHAVGT 124 D + +HDP AE AA Y+ LR+HKGV+EA A AA+ P VYAA+LVR HA GT Sbjct: 63 ELDGIDVHDPREDLHRAEMAATYHQLRKHKGVTEADAEAAILNPHVYAALLVRLGHADGT 122 Query: 125 VGGAVATTSDVVRTAIQVIGAAPGAAMVSSFFLMYPPEAATAHARAMLYSDSGLVIDPSV 184 +GGA ATT+++VRTAIQVIG APGA MVSSFFLM + ++++D+GLVIDP+ Sbjct: 123 LGGATATTAEIVRTAIQVIGTAPGAKMVSSFFLMLLCKDHHEKKGGLVFADAGLVIDPTA 182 Query: 185 AELAAIAAASAASCRALLRAEPKIAMLSFSTKGSARHPHVSKVTDALARLRADHPDLDAD 244 AE+A I ASAAS L P++AMLSFST+GSA VSKV +A R P++ D Sbjct: 183 AEMAEIGRASAASLVQLTGETPRVAMLSFSTRGSASGDKVSKVVEATEIFRQLAPEVTVD 242 Query: 245 GELQFDAAFVPSVGASKAPGSDVAGQANVMIFPNLDAGNIGYKITQRLGGYTAIGPVLQG 304 GELQFDAAFVP V +KAP S + G ANV +FPNLD GNI YKI QR+GG AIGP+LQG Sbjct: 243 GELQFDAAFVPEVATAKAPDSAIGGSANVFVFPNLDTGNIAYKIAQRIGGAVAIGPILQG 302 Query: 305 LAKPANDLSRGCVAGDVTQMIAVTVLQ 331 LA PANDLSRGC A DV MIA T Q Sbjct: 303 LALPANDLSRGCSAEDVLHMIATTAAQ 329 Lambda K H 0.317 0.130 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 268 Number of extensions: 12 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 341 Length adjustment: 28 Effective length of query: 309 Effective length of database: 313 Effective search space: 96717 Effective search space used: 96717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate 3608428 Dshi_1825 (phosphate acetyltransferase (RefSeq))
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))
../bin/blast/fastacmd -i /tmp/list.27732.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27732.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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