Align Acetate kinase; EC 2.7.2.1; Acetokinase (uncharacterized)
to candidate 3608653 Dshi_5006 hypothetical protein (NCBI)
Query= curated2:Q6N143 (398 letters) >FitnessBrowser__Dino:3608653 Length = 385 Score = 283 bits (723), Expect = 8e-81 Identities = 172/394 (43%), Positives = 230/394 (58%), Gaps = 20/394 (5%) Query: 2 SDVLLVLNAGSSSIKFALYEAHTEPTADHLICEGGIGSLGHRPHFKVVNSDGSTRYDTYL 61 SD++LVLNAGSSS+KFAL+ T A+HL G S+G K+ G+ L Sbjct: 7 SDLILVLNAGSSSLKFALF---TPALAEHLT--GQAESIGGPGRLKI----GARSASCDL 57 Query: 62 PEGTSHDDAMAVLIGWIETT-FPEHRLSAVGHRVVHGGALFDGPVDVTPEVIAQLRAFDR 120 P+ H A+A ++ + T L AV HRVVHGG PV +TP +++ A Sbjct: 58 PD---HGAALAAILEALATRGITASHLKAVAHRVVHGGVRLTAPVRITPATRSEIAACSA 114 Query: 121 LAPLHQPHNVSAIEALAKLHPSLPQIACFDTAFHHRLPEVATAFALPRELTEQGVRRYGF 180 LAPLH PHN++AI+ + L P +PQ A FDTAFH PEVA + LP G+RRYGF Sbjct: 115 LAPLHNPHNLAAIDRITALMPDVPQCASFDTAFHASNPEVALRYGLPDTAETAGLRRYGF 174 Query: 181 HGLSYEYIAGRLPDVAGQAVADGRVVVAHLGAGASMCAMLRCRSIATTMGFTALDGLMMG 240 HG SY + V G A+ D R++ HLG+GAS+CA+ RS+ATTMG++ L+GL M Sbjct: 175 HGQSYAAMVDSWSRVTGAALPD-RLLAFHLGSGASICAIRDGRSVATTMGYSPLEGLTMA 233 Query: 241 SRCGELDPGVVLYLLEEKSMT-AREIEDLLYRESGLLGVSGISDDMRTLLASDDPHACEA 299 +R G +D VL L E+ + AR I L ESGL G+SG DMRTL+ASD P A A Sbjct: 234 TRSGSIDGNAVLKLAEDHGIARARRI---LNNESGLAGLSGGLSDMRTLMASDRPEAGFA 290 Query: 300 IELFVYRIARELGSLAAALGGLDALVFTGGIGEHASEIRRRVCEQAAWLGVTLDPDANAS 359 ++ FVY R SL A LGG + + FTGGIGE+A+EIR R+ W+G +DP+ANA Sbjct: 291 VDHFVYWAVRHASSLLAPLGGTETIAFTGGIGENAAEIRARIVAGLHWIGAEIDPEANA- 349 Query: 360 LSGAGRISAPDSKVSAWAIPTDEDLMIARHVWRL 393 G + + S + IP +E+ M+A R+ Sbjct: 350 -EGQTALHSAASATGIYIIPAEEERMLAADALRV 382 Lambda K H 0.321 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 478 Number of extensions: 26 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 398 Length of database: 385 Length adjustment: 31 Effective length of query: 367 Effective length of database: 354 Effective search space: 129918 Effective search space used: 129918 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.9 bits)
Align candidate 3608653 Dshi_5006 (hypothetical protein (NCBI))
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.16709.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16709.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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