Align Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized)
to candidate 3607991 Dshi_1399 acetate--CoA ligase (RefSeq)
Query= SwissProt::P27550 (652 letters) >FitnessBrowser__Dino:3607991 Length = 653 Score = 842 bits (2176), Expect = 0.0 Identities = 401/642 (62%), Positives = 494/642 (76%), Gaps = 5/642 (0%) Query: 7 HTIPANIADRCLINPQQYEAMYQQSINVPDTFWGEQGKILDWIKPYQKVKNTSFAPGNVS 66 +T A+ I+ +Y MY S++ P+ FWGE G+ LDWIKPY KVK+TSFA +V Sbjct: 9 YTPSADFVKNAHIDSSKYSEMYAASVSDPEGFWGEHGRSLDWIKPYTKVKDTSFAHDDVH 68 Query: 67 IKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDD-ASQSKHISYKELHRDVCRFANTLL 125 ++W+EDGTLN+AANC+DRHL GD+TAII+E DD A ++HI+Y+ELHR VC+ +N L Sbjct: 69 VRWFEDGTLNVAANCIDRHLATRGDQTAIIFEPDDPAEPAQHITYRELHRQVCKLSNVLE 128 Query: 126 ELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVIT 185 +LG++KGD V +YMPM+PEAA AMLACARIGA+HS++F GFSP+A++ RI +++RL+IT Sbjct: 129 DLGVRKGDRVILYMPMIPEAAYAMLACARIGAIHSIVFAGFSPDALSARINGADARLLIT 188 Query: 186 SDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQAS 245 +D R GR PLK N D AL + ++V+KRTGG+ W +GRD +H+L+ +A Sbjct: 189 ADYAPRGGRQTPLKSNADAALLHTR--DDVKMLVVKRTGGQTTWVDGRDFDYHELMLEAD 246 Query: 246 DQHQAEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIYWCTA 305 + E+ AE PLFILYTSGSTG+PKGV+H++GGYL+YAA+T KYVFD H GD+YWCTA Sbjct: 247 EVQHPVEVEAEHPLFILYTSGSTGQPKGVVHSSGGYLLYAAMTQKYVFDVHEGDVYWCTA 306 Query: 306 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAIRALM 365 DVGWVTGHSY++YGPLA G TT+MFEGVP +P +R QV DKH+V YTAPTAIRALM Sbjct: 307 DVGWVTGHSYIVYGPLANGGTTVMFEGVPTYPDASRFWQVCDKHKVTQFYTAPTAIRALM 366 Query: 366 AEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMITP 425 A+G + +E D SSLR+LG+VGEPINPEAW WY +G +CP+VDTWWQTETGG ++TP Sbjct: 367 AKGPEFVETCDLSSLRVLGTVGEPINPEAWNWYNDLVGKGRCPIVDTWWQTETGGHLLTP 426 Query: 426 LPGATELKAGSATRPFFGVQPALVDNEGNP--LEGATEGSLVITDSWPGQARTLFGDHER 483 LPGA K GSAT PFFGVQP ++D E EG L + DSWPGQ RT++GDHER Sbjct: 427 LPGAIATKPGSATLPFFGVQPVVLDPHSGAEITETECEGVLCLKDSWPGQMRTVYGDHER 486 Query: 484 FEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIA 543 F +TYFS +K YFSGDG RRD DGYYWITGRVDDV+NVSGHR+GTAE+ESALVAH K+A Sbjct: 487 FVKTYFSDYKGYYFSGDGCRRDADGYYWITGRVDDVINVSGHRMGTAEVESALVAHAKVA 546 Query: 544 EAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP 603 EAAVVG PH+IKGQ IY YVTL +GEEPS EL E+R WVR EIGP+A PD++ W LP Sbjct: 547 EAAVVGYPHDIKGQGIYCYVTLMNGEEPSEELRKELRTWVRTEIGPIAAPDLIQWAPGLP 606 Query: 604 KTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645 KTRSGKIMRRILRKIA D LGDTSTLADP VVE L+E + Sbjct: 607 KTRSGKIMRRILRKIAEDDFGALGDTSTLADPSVVEDLIENR 648 Lambda K H 0.317 0.135 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1427 Number of extensions: 66 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 652 Length of database: 653 Length adjustment: 38 Effective length of query: 614 Effective length of database: 615 Effective search space: 377610 Effective search space used: 377610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate 3607991 Dshi_1399 (acetate--CoA ligase (RefSeq))
to HMM TIGR02188 (acs: acetate--CoA ligase (EC 6.2.1.1))
../bin/blast/fastacmd -i /tmp/list.8560.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8560.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.