Align Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized)
to candidate 3610172 Dshi_3553 acetate--CoA ligase (RefSeq)
Query= SwissProt::P27550 (652 letters) >FitnessBrowser__Dino:3610172 Length = 658 Score = 841 bits (2172), Expect = 0.0 Identities = 399/630 (63%), Positives = 490/630 (77%), Gaps = 5/630 (0%) Query: 19 INPQQYEAMYQQSINVPDTFWGEQGKILDWIKPYQKVKNTSFAPGNVSIKWYEDGTLNLA 78 I+ +Y MY S++ P+ FWGE G+ LDWIKPY KVK+TSFA +V ++W+EDGTLN+A Sbjct: 26 IDSSKYSEMYAASVSDPEGFWGEHGRSLDWIKPYTKVKDTSFAHDDVHVRWFEDGTLNVA 85 Query: 79 ANCLDRHLQENGDRTAIIWEGDD-ASQSKHISYKELHRDVCRFANTLLELGIKKGDVVAI 137 ANC+DRHL GD+TAII+E DD A ++HI+Y+ELHR VC+ +N L +LG++KGD V + Sbjct: 86 ANCIDRHLATRGDQTAIIFEPDDPAEPAQHITYRELHRQVCKLSNVLEDLGVRKGDRVIL 145 Query: 138 YMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVITSDEGVRAGRSIP 197 YMPM+PEAA AMLACARIGA+HS++F GFSP+A++ RI +++RL+IT+D R GR P Sbjct: 146 YMPMIPEAAYAMLACARIGAIHSIVFAGFSPDALSARINGADARLLITADYAPRGGRQTP 205 Query: 198 LKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQASDQHQAEEMNAED 257 LK N D AL + ++V+KRTGG+ W +GRD +H+L+ +A + E+ AE Sbjct: 206 LKSNADAALLHTR--DDVKMLVVKRTGGQTTWVDGRDFDYHELMLEADEVQHPVEVEAEH 263 Query: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317 PLFILYTSGSTG+PKGV+H++GGYL+YAA+T KYVFD H GD+YWCTADVGWVTGHSY++ Sbjct: 264 PLFILYTSGSTGQPKGVVHSSGGYLLYAAMTQKYVFDVHEGDVYWCTADVGWVTGHSYIV 323 Query: 318 YGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR 377 YGPLA G TT+MFEGVP +P +R QV DKH+V YTAPTAIRALMA+G + +E D Sbjct: 324 YGPLANGGTTVMFEGVPTYPDASRFWQVCDKHKVTQFYTAPTAIRALMAKGPEFVETCDL 383 Query: 378 SSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMITPLPGATELKAGSA 437 SSLR+LG+VGEPINPEAW WY +G +CP+VDTWWQTETGG ++TPLPGA K GSA Sbjct: 384 SSLRVLGTVGEPINPEAWNWYNDLVGKGRCPIVDTWWQTETGGHLLTPLPGAIATKPGSA 443 Query: 438 TRPFFGVQPALVDNEGNP--LEGATEGSLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 495 T PFFGVQP ++D E EG L + DSWPGQ RT++GDHERF +TYFS +K Sbjct: 444 TLPFFGVQPVVLDPHSGAEITETECEGVLCLKDSWPGQMRTVYGDHERFVKTYFSDYKGY 503 Query: 496 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHNIK 555 YFSGDG RRD DGYYWITGRVDDV+NVSGHR+GTAE+ESALVAH K+AEAAVVG PH+IK Sbjct: 504 YFSGDGCRRDADGYYWITGRVDDVINVSGHRMGTAEVESALVAHAKVAEAAVVGYPHDIK 563 Query: 556 GQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 615 GQ IY YVTL +GEEPS EL E+R WVR EIGP+A PD++ W LPKTRSGKIMRRIL Sbjct: 564 GQGIYCYVTLMNGEEPSEELRKELRTWVRTEIGPIAAPDLIQWAPGLPKTRSGKIMRRIL 623 Query: 616 RKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645 RKIA D LGDTSTLADP VVE L+E + Sbjct: 624 RKIAEDDFGALGDTSTLADPSVVEDLIENR 653 Lambda K H 0.317 0.135 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1413 Number of extensions: 63 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 652 Length of database: 658 Length adjustment: 38 Effective length of query: 614 Effective length of database: 620 Effective search space: 380680 Effective search space used: 380680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate 3610172 Dshi_3553 (acetate--CoA ligase (RefSeq))
to HMM TIGR02188 (acs: acetate--CoA ligase (EC 6.2.1.1))
../bin/blast/fastacmd -i /tmp/list.8910.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8910.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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