Align UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) (characterized)
to candidate 3610487 Dshi_3868 UDP-glucose 4-epimerase (RefSeq)
Query= metacyc::BSU38860-MONOMER (339 letters) >FitnessBrowser__Dino:3610487 Length = 359 Score = 357 bits (917), Expect = e-103 Identities = 179/325 (55%), Positives = 227/325 (69%) Query: 3 ILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITGKDLTFYEADLLDR 62 IL+TGGAGYIGSHT V L +G+E+V+LD+ SN++ + +R++ ITG + YE +LDR Sbjct: 5 ILLTGGAGYIGSHTYVALKAAGFEVVILDDFSNAARDVPDRLELITGAPVRLYEGSVLDR 64 Query: 63 EAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIVFS 122 + +F E I+AV+HFA KAVGESVA+PL Y+ N TG L + ME V ++VFS Sbjct: 65 GLLARLFTETRIDAVVHFAARKAVGESVAMPLAYFETNCTGLVGLLQEMEAACVHRLVFS 124 Query: 123 SSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPFGA 182 SSATVYG+P+ +P E P NPYG TK+ E IL L T+D +W+ LRYFNP GA Sbjct: 125 SSATVYGIPDVTPTPETAPHRHMNPYGLTKITGELILDALATSDPKWAFGTLRYFNPAGA 184 Query: 183 HPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAEGH 242 H S IGEDP+ IPNNLMPY+AQVA+G+ L VFG+DYPT DGTGVRDYIHV DLAEGH Sbjct: 185 HGSALIGEDPSDIPNNLMPYIAQVAMGQRPHLQVFGDDYPTPDGTGVRDYIHVEDLAEGH 244 Query: 243 VKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATCFADP 302 V +L+ +L + + NLGTG GYSVLEMV A+ G+ +PYR DRRPGD+ A Sbjct: 245 VLSLKSLLETGESHLVNLGTGRGYSVLEMVAAYSAACGRALPYRIVDRRPGDVPIYCATV 304 Query: 303 AKAKRELGWEAKRGLEEMCADSWRW 327 +A+ LG+EAKR L +MCA SW W Sbjct: 305 ERARALLGFEAKRDLAQMCASSWAW 329 Lambda K H 0.315 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 410 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 339 Length of database: 359 Length adjustment: 29 Effective length of query: 310 Effective length of database: 330 Effective search space: 102300 Effective search space used: 102300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate 3610487 Dshi_3868 (UDP-glucose 4-epimerase (RefSeq))
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))
../bin/blast/fastacmd -i /tmp/list.1714.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1714.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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