Align phenylacetate-CoA ligase (EC 6.2.1.30) (characterized)
to candidate 3610443 Dshi_3824 phenylacetate-CoA ligase (RefSeq)
Query= BRENDA::B4E7B5 (432 letters) >FitnessBrowser__Dino:3610443 Length = 436 Score = 573 bits (1476), Expect = e-168 Identities = 280/425 (65%), Positives = 336/425 (79%), Gaps = 1/425 (0%) Query: 7 LEPIETASRDELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLADLSRFPFT 66 L+PIE ASRDE+ ALQL+R+KWSLRHAYD+ P+YR +FD AGVHPDDL+ L DL++FPFT Sbjct: 11 LDPIEIASRDEIAALQLDRMKWSLRHAYDNVPMYRARFDAAGVHPDDLRDLKDLAKFPFT 70 Query: 67 TKGDLRDSYPFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGA 126 K DLRD YPFGM AVP+DR+ R+HASSGTTGKPTVV YT DI+ WA+ +ARS+RA+G Sbjct: 71 HKSDLRDHYPFGMSAVPRDRLVRVHASSGTTGKPTVVVYTRHDIEVWADTLARSLRASGL 130 Query: 127 RRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPS 186 R GD +H +YGYGLFTGGLGAHYG E+ G TVIP GGGQTEKQV LI DFRP IMVTPS Sbjct: 131 RAGDMIHNAYGYGLFTGGLGAHYGIEKLGATVIPMGGGQTEKQVSLIHDFRPTAIMVTPS 190 Query: 187 YMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPG 246 YML+I + + GLDP QSSL++G+FGAEPWTN MR +E+ + AVDIYGLSEVMGPG Sbjct: 191 YMLNILEGFHKAGLDPRQSSLQVGVFGAEPWTNAMRQEVEEAFDMHAVDIYGLSEVMGPG 250 Query: 247 VASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEALPIIRYRTRDL 306 VA+ECVETKDG +WEDH+YPEIIDP+TGEVL DG GELVFT+LTKE +P+IRYRTRDL Sbjct: 251 VANECVETKDGLHVWEDHYYPEIIDPQTGEVLKDGAEGELVFTTLTKEGMPMIRYRTRDL 310 Query: 307 TRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGP 366 TRLLPGTAR+MRR+EKITGRSDDMMI+RGVNVFPTQIEEQ++ L P++QI L G Sbjct: 311 TRLLPGTARSMRRIEKITGRSDDMMILRGVNVFPTQIEEQVMATGGLGPYFQIELYTSGR 370 Query: 367 LDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSVGKARRV 426 LD + + VE P A D + A + L ++ ++GV+ + V + RS GKA RV Sbjct: 371 LDAMRVFVEATP-AAADELSRTAAARVLTKHVRDMVGVSIEVVVGDPGSVARSQGKAVRV 429 Query: 427 VDKRK 431 +D RK Sbjct: 430 IDNRK 434 Lambda K H 0.319 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 630 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 432 Length of database: 436 Length adjustment: 32 Effective length of query: 400 Effective length of database: 404 Effective search space: 161600 Effective search space used: 161600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate 3610443 Dshi_3824 (phenylacetate-CoA ligase (RefSeq))
to HMM TIGR02155 (paaF: phenylacetate-CoA ligase (EC 6.2.1.30))
../bin/blast/fastacmd -i /tmp/list.6587.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6587.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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