Align L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (characterized)
to candidate 3608920 Dshi_2311 delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq)
Query= reanno::Marino:GFF2744 (1209 letters) >FitnessBrowser__Dino:3608920 Length = 1221 Score = 1263 bits (3267), Expect = 0.0 Identities = 665/1209 (55%), Positives = 848/1209 (70%), Gaps = 19/1209 (1%) Query: 15 RQAIRDYYLADEHKVIHEMIAGAQLSQAERDAISARAAELVRSVRKNAKSTIMEKFLAEY 74 R +R +Y A+E ++ + A +LS ER+ +A A V VR + ++ME FLAEY Sbjct: 16 RAQVRAHYTAEETALLKSLAARIKLSAHEREKAAAAGARYVTRVRNETRPSMMEAFLAEY 75 Query: 75 GLTTKEGVALMCLAEALLRVPDNTTIHELIEDKITSGAWGTHVGKASSGLINTATVALLM 134 GL+T EGV LMCLAEALLRVPD TI +LIEDK+ WG H+G +SS L+N +T AL++ Sbjct: 76 GLSTSEGVGLMCLAEALLRVPDADTIDDLIEDKVAPSNWGAHLGHSSSSLVNASTWALML 135 Query: 135 TSNLLKDSERNTVGETLRKLLKRFGEPVIRTVAGQAMKEMGRQFVLGRDIDEAQDEAKEY 194 T +L + R LR L+KR GEPV+RT GQ+MK +GRQFVLG+ I+E A+E Sbjct: 136 TGKVLDEDPRGPA-RALRGLVKRLGEPVVRTAVGQSMKVLGRQFVLGQTIEEGLKNAREL 194 Query: 195 MAKGYTYSYDMLGEAARTDDDAKRYYDSYSNAIDSIAKASKGDVRKNPGISVKLSALLAR 254 KG+TYSYDMLGEAARTD DA+RY+ +Y+ AI +IA+ + GDVR +PGISVKLSAL R Sbjct: 195 EKKGFTYSYDMLGEAARTDADARRYHAAYAQAITAIARQATGDVRSSPGISVKLSALHPR 254 Query: 255 YEYGNKERVMNELLPRARELVKKAAAANMGFNIDAEEQDRLDLSLDVIEELVADPELAGW 314 YEY ++ VM +L+PRA LVK+AA A +GFN+DAEEQDRLDLSLDVIE +++DP+L GW Sbjct: 255 YEYTHRHSVMADLVPRAAALVKQAAQAGIGFNVDAEEQDRLDLSLDVIEAMMSDPDLDGW 314 Query: 315 DGFGVVVQAYGKRSSFVLDWLYGLAEKYDRKFMVRLVKGAYWDAEIKRAQVMGLNGFPVF 374 DGFGVVVQAYG+R+ V++ LY +AE+YDRK MVRLVKGAYWD EIK AQ +G+ FPVF Sbjct: 315 DGFGVVVQAYGRRAGPVIETLYDMAERYDRKIMVRLVKGAYWDTEIKLAQELGVERFPVF 374 Query: 375 TRKACSDVSFLSCATKLLNMTNRIYPQFATHNAHSVSAILEMAKTKGVDNYEFQRLHGMG 434 TRK +DVS+++CA LL+ +RIYPQFATHNAH+ +A+L+MA D +EFQRLHGMG Sbjct: 375 TRKNNTDVSYMACAQMLLDRRDRIYPQFATHNAHTCAAVLQMAGNAR-DCFEFQRLHGMG 433 Query: 435 ESLHNEVLKVSGVPCRIYAPVGPHKDLLAYLVRRLLENGANSSFVNQIVDKRITPEEIAK 494 SLH V + G CRIYAPVG H+DLLAYLVRRLLENGANSSFVNQIVD I E I+ Sbjct: 434 ASLHQIVKETEGTRCRIYAPVGAHQDLLAYLVRRLLENGANSSFVNQIVDPDIPAEAISA 493 Query: 495 DPIVSVEEMGNNISSKAIVHPFKLFGDQRRNSKGWDITDPVTVNEIEKGRGAYKDYRWKG 554 DP+ +E++G+ I + AI P LF RRNS+G+ + +P ++ + R A+ + W Sbjct: 494 DPVSEMEKLGDQIPNPAIRQPSDLFAPDRRNSRGYRVNEPASILPLMTAREAFAETTWHA 553 Query: 555 GPLIAGEVAGT-EIQVVRNPADPDDLVGHVTQASDADVDTAITSAAAAFESWSAKSAEER 613 P++AG T + V +PAD LVG V +AS DV A+ +A F WSA+ ER Sbjct: 554 RPMLAGGRDPTGPTREVHSPADKTRLVGTVQEASAEDVACALDAAETGFRDWSARPVSER 613 Query: 614 AACVRKVGDLYEENYAELFALTTREAGKSLLDAVAEIREAVDFSQYYANEAIRYK--DSG 671 A +RK+ D+YE+N AEL A+TTREAGK++LD +AE+REAVDF ++YANEA R + D G Sbjct: 614 ADMLRKLADMYEDNIAELTAITTREAGKTVLDGIAEVREAVDFLRFYANEAERLEEEDPG 673 Query: 672 DARGVMCCISPWNFPLAIFTGQILANLAAGNTVVAKPAEQTSLLAIRAVELMHQAGIPKD 731 RG+ CISPWNFPLAIFTGQI A L GN V+AKPAEQT ++A RAV++M G+P Sbjct: 674 RPRGIFVCISPWNFPLAIFTGQIAAALVMGNAVLAKPAEQTPIIAARAVQMMRDCGLPDA 733 Query: 732 AIQLVPGTGATVGAALTSDSRVSGVCFTGSTATAQRINKVMTENMAPDAPLVAETGGLNA 791 A+QL+PG G VG LTSD R++GVCFTGST A I+K + +N P+A LVAETGGLNA Sbjct: 734 ALQLLPGDGPMVGGPLTSDPRIAGVCFTGSTEVAMIIHKALAKNAGPEAVLVAETGGLNA 793 Query: 792 MIVDSTALPEQVVRDVLASSFQSAGQRCSALRMLYVQRDIADGLLEMLYGAMEELGIGDP 851 MIVDSTAL EQ VRD+L SSFQSAGQRCSALR+LYVQ D+ D L+EML GA++ L IGD Sbjct: 794 MIVDSTALHEQAVRDILISSFQSAGQRCSALRILYVQEDVHDKLMEMLSGALDALVIGDS 853 Query: 852 WLLSTDVGPVIDENARKKIVDHCEKFERNGKLLKKMKVPEKGLFVSPAVLSVSGIEELEE 911 W L DV PVID +A+ I+ + ++ + G L+K + P+ G +V+PA++ V GI ++E Sbjct: 854 WNLDVDVSPVIDADAQSDILGYIDQHRKAGTLIKTLAAPDSGTYVTPAIVKVGGIADMER 913 Query: 912 EIFGPVLHVATFEAKNIDKVVDDINAKGYGLTFGIHSRVDRRVERITSRIKVGNTYVNRN 971 EIFGPVLHVATF+A ID+VVD INA+ YGLTFG+H+R+D RVE+I RI+VGN YVNRN Sbjct: 914 EIFGPVLHVATFKANEIDQVVDAINARRYGLTFGLHTRIDDRVEQIVERIQVGNVYVNRN 973 Query: 972 QIGAIVGSQPFGGEGLSGTGPKAGGPQYVRRFLK-GETVEREADSNARKVDAKQLQKLIG 1030 QIGAIVGSQPFGGEGLSGTGPKAGGP Y+ RF K G++ A A + L + Sbjct: 974 QIGAIVGSQPFGGEGLSGTGPKAGGPLYLTRFRKVGKSTSHPAPQGA-VLGKAALNTALS 1032 Query: 1031 QLDKLK-ASRPE----ARMDAIRPIFGNVPEPL------DAHVEALPGPTGETNRLSNHA 1079 LD A+RP+ RM A+ G V L D + LPGPTGE+NRLS Sbjct: 1033 SLDARNWAARPDRVHILRM-ALSGSTGVVRRALSETAAFDMSPQTLPGPTGESNRLSMVP 1091 Query: 1080 RGVVLCLGPDKETALEQAGTALSQGNKVVVIAPGTQDVVDQANKAGLPIVGAQGLLEPEA 1139 RG VLCLGP E A+ QA AL G VV+ PG+ + + AG P+V G ++ Sbjct: 1092 RGTVLCLGPTPEIAMAQAVQALGAGCAVVIALPGSTPLSQPLSDAGAPVVTLDGTVDCVT 1151 Query: 1140 LATIDGFEAVVSCGDQPLLKAYREALAKRDGALLPLITEHTLDQRFVIERHLCVDTTAAG 1199 L + G E V + G + R AL++RDG ++PLI + +R+V+ERHLC+DTTAAG Sbjct: 1152 LTELTGIEVVAAAGASDWTRTLRVALSQRDGPIIPLIVDEIAPERYVLERHLCIDTTAAG 1211 Query: 1200 GNASLIAAS 1208 GNA L+AAS Sbjct: 1212 GNAKLLAAS 1220 Lambda K H 0.316 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 3465 Number of extensions: 168 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1209 Length of database: 1221 Length adjustment: 47 Effective length of query: 1162 Effective length of database: 1174 Effective search space: 1364188 Effective search space used: 1364188 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 59 (27.3 bits)
Align candidate 3608920 Dshi_2311 (delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq))
to HMM TIGR01238 (delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88))
../bin/blast/fastacmd -i /tmp/list.31793.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31793.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.