Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate 3608411 Dshi_1811 dihydrolipoamide dehydrogenase (RefSeq)
Query= BRENDA::P50970 (466 letters) >FitnessBrowser__Dino:3608411 Length = 465 Score = 538 bits (1385), Expect = e-157 Identities = 264/462 (57%), Positives = 345/462 (74%), Gaps = 2/462 (0%) Query: 5 FDLIVLGGGPGGYVAAIRAAQLNLKVALVERVHLGGICLNWGCIPTKSLLRSAEVYHEMQ 64 FD++V+G GPGGYVAAIRAAQL LKVA+VER H+GGICLNWGCIPTK++LRS+EV+H M Sbjct: 6 FDMVVVGAGPGGYVAAIRAAQLGLKVAIVEREHMGGICLNWGCIPTKAMLRSSEVFHLMH 65 Query: 65 NAEAYGLTSFKPDFDLDKIIARSREVATRLASGVKTLLRKNKVEVISGVGQLTGNQQMLV 124 A+ +GL + +DLD ++ARSR +A +L SGV L++KNKV V+ G L + V Sbjct: 66 RAKEFGLKADGVGYDLDAVVARSRAIAKQLNSGVSHLMKKNKVTVVMGEASLPAKGTVAV 125 Query: 125 ETTEGEEKILEAKDIIIATGARARQLPNVHSDGKHIWTYHHALKPPAMPKKLLVIGSGAI 184 +T +G E L A +++ATGARAR+LP + +DG +WTY HAL P MPKKLLVIGSGAI Sbjct: 126 KTDKGTET-LRAPHVVLATGARARELPGLEADGDLVWTYKHALTPKRMPKKLLVIGSGAI 184 Query: 185 GIEFASFYADFGAEVSIVEHAPQILPMEDAEVSAYVAKAFKKRGIRILTQSALQNLTPDD 244 GIEFASFY G E ++VE +ILP+EDAE+S + K F+K+G+ I ++ +++L Sbjct: 185 GIEFASFYNTLGTETTVVEVMDRILPVEDAEISGFAKKQFEKQGMTIREKAMVKSLERGK 244 Query: 245 EGVTAEIAGADGKVTKERFSHAIVAIGVVANVENIGLDKLGIKLDRGFIAVDGFGRTNVD 304 VTA+I GK T E F I A+G+V N E +GL+ LG+++++ + D + RT V+ Sbjct: 245 GTVTAQIEQG-GKTTAETFDTVISAVGIVGNTEKLGLEALGVRVEKTHVVTDAYCRTGVE 303 Query: 305 HVWAIGDVAGAPCLAHKASHQGVIAAEAIAGCDHVHPLNTQNIPGCTYARPQVASVGLTE 364 ++AIGD+AGAP LAHKASH+GV+ AE IAG + VHP+ +I GCTY +PQ+ASVG+TE Sbjct: 304 GLYAIGDLAGAPWLAHKASHEGVMVAELIAGRNDVHPVTPDSIAGCTYCQPQIASVGMTE 363 Query: 365 EKARQQGYNVKIGNFPFIANGKAIAQGATDGFVKTVFDADSGALLGAHMVGAEVTEMIQG 424 +A++ G+ +K+G FPFI NGKAIA G +G +KTVFDA +G LLGAHMVGAEVTE+IQG Sbjct: 364 AQAKEAGHKIKVGRFPFIGNGKAIALGEPEGMIKTVFDAGTGELLGAHMVGAEVTELIQG 423 Query: 425 YTVARTLETTEAEIMETIFPHPTLSEAMHESVLAAYGRALHF 466 Y V R LETTE ++M T+FPHPTLSE MHESVL AYGRALHF Sbjct: 424 YVVGRQLETTEEDLMNTVFPHPTLSEMMHESVLDAYGRALHF 465 Lambda K H 0.319 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 677 Number of extensions: 26 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 466 Length of database: 465 Length adjustment: 33 Effective length of query: 433 Effective length of database: 432 Effective search space: 187056 Effective search space used: 187056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate 3608411 Dshi_1811 (dihydrolipoamide dehydrogenase (RefSeq))
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.9623.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9623.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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