Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate 3608572 Dshi_1966 dihydrolipoamide dehydrogenase (RefSeq)
Query= BRENDA::Q0KBV8 (594 letters) >FitnessBrowser__Dino:3608572 Length = 580 Score = 691 bits (1783), Expect = 0.0 Identities = 356/591 (60%), Positives = 433/591 (73%), Gaps = 14/591 (2%) Query: 4 IEVKVPDIGDFDAVEVIEVLVKAGDTVEVEQSLIVLESDKASMDVPSSAAGKVVEVKVKV 63 +++KVPDIGDF V V+ +LV GDTV E LI LESDKA+M+VPS AAG V E+KV Sbjct: 1 MDIKVPDIGDFTDVPVVSILVAVGDTVAEEDPLIELESDKATMEVPSPAAGVVKEIKVAE 60 Query: 64 GDKVGQGAVICTIEAQQAAAAPAPAQAPAPAQAPAPAAAAPAPAPAAASHSGGADIQCEM 123 GD V +G VI E+ A AP A +APA AAAAP A + +G D+ E+ Sbjct: 61 GDNVSEGTVIMVFESSGAEEAPKGAD-----EAPA-AAAAPEAVAATGTATGPGDVHGEV 114 Query: 124 LVLGAGPGGYSAAFRAADLGMNTVLVERYSTLGGVCLNVGCIPSKALLHNAAVIDEAKAL 183 +VLG+GPGGY+AAFRAADLG VL+ERY +LGGVCLNVGCIPSKALLH A VI EA+ + Sbjct: 115 VVLGSGPGGYTAAFRAADLGKKVVLIERYPSLGGVCLNVGCIPSKALLHVAKVITEAEEM 174 Query: 184 AAHGILFGEAKIDLDGLRHYKNQVVGKLTGGLAGMAKARKVQVVRGIGNFLDPHHMEVEL 243 AHG+ FG+ K+DLD LR +K+ V+G+LTGGL+G+AK RKV+VV G G F P+ + VE Sbjct: 175 GAHGVSFGKPKVDLDELRAFKDSVIGQLTGGLSGLAKGRKVEVVTGYGKFTGPNMIAVEG 234 Query: 244 TEGEGKRSTGKKTVIRFEKAIIAAGSQAVKLPFIPEDPRIVDSTGALELPEVPNKMLVIG 303 +G T + F++ IIAAGS+ V LPF+PED RI+DSTGALEL ++P +ML++G Sbjct: 235 EDGV--------TTVSFDQCIIAAGSEPVNLPFLPEDDRIIDSTGALELKDIPKRMLILG 286 Query: 304 GGIIGLEMATVYSTLGADIDVVEMLDGLMNGADRDLVKVWEKKNKDRFGKVMLKTKTVGV 363 GGIIGLEMA VY LG+DI VVE +D LM GAD+D+VK K+ + R+ ++LKTK GV Sbjct: 287 GGIIGLEMACVYDALGSDITVVEFMDQLMPGADKDIVKPLHKRIEGRYENILLKTKVTGV 346 Query: 364 EAKPDGIYVKFEGEAAPAEPQRYDLVLVSVGRSPNGKRISAEKAGVAVSERGFINVDKQM 423 EA G+ V FE +D VLV+VGR PNG I AEKAGVAV ERGFI VD Q Sbjct: 347 EALKKGLKVTFEDAKGELTTDTFDKVLVAVGRKPNGALIDAEKAGVAVDERGFIAVDSQQ 406 Query: 424 RTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEAAHGEKAYFDAKQIPSVAFTDPEVAWAG 483 RT V HIFAIGD+VGQPMLAHKAVHE VAAE G +FDA+ IPSVA+TDPEVAW G Sbjct: 407 RTGVAHIFAIGDLVGQPMLAHKAVHEGKVAAEVCAGHNRHFDARLIPSVAYTDPEVAWCG 466 Query: 484 LTEDECKEKGIKYSKGVFPWAASGRAIANGRDEGFTKLIFDEETHRVIGGGIVGTHAGDL 543 +TE + K KGI Y KGVFPWAASGR+++NGR EG TKL+FD E RVIG IVGT+AGDL Sbjct: 467 VTETDAKAKGIAYEKGVFPWAASGRSLSNGRSEGITKLLFDPEDDRVIGACIVGTNAGDL 526 Query: 544 ISEVCLAIEMGADAVDIGKTIHPHPTLGESIGMAAEIYEGTCTDVPPPRKR 594 ISEV LAIEMGADAVD+G TIHPHPTL E++ AAE++EGT TD+ PP+K+ Sbjct: 527 ISEVALAIEMGADAVDLGHTIHPHPTLSETVNFAAEMFEGTITDLMPPKKK 577 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 988 Number of extensions: 52 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 594 Length of database: 580 Length adjustment: 37 Effective length of query: 557 Effective length of database: 543 Effective search space: 302451 Effective search space used: 302451 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate 3608572 Dshi_1966 (dihydrolipoamide dehydrogenase (RefSeq))
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.1685.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1685.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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