Align N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (characterized)
to candidate N515DRAFT_0589 N515DRAFT_0589 N-acetylglucosamine-6-phosphate deacetylase
Query= reanno::Caulo:CCNA_00452 (378 letters) >FitnessBrowser__Dyella79:N515DRAFT_0589 Length = 386 Score = 378 bits (971), Expect = e-109 Identities = 202/373 (54%), Positives = 253/373 (67%), Gaps = 1/373 (0%) Query: 4 ALINGRVLTESGVVEGKAVLVKDGLILDVIEAAQTPSDAKPR-DLKGGLLVPGFIDTQVN 62 AL+NGRVL + G AVLV+ G I ++ A D R DL+G LL+PGFID QVN Sbjct: 9 ALVNGRVLADHGPRNDLAVLVRGGRIEALVPAGDPSLDKATRHDLQGRLLLPGFIDVQVN 68 Query: 63 GGGGVLFNDAPTVETIATIGAAHRRFGTTGFLPTLISDDLRVVDQAMRATEEAIARGVPG 122 GGGG+LFN APTV+T+ I AAHRRFGTTG LPTLI+D V+ A+ A + AIA GVPG Sbjct: 69 GGGGLLFNAAPTVDTLRGIAAAHRRFGTTGMLPTLITDTADVMHAALEAVDAAIAEGVPG 128 Query: 123 VLGLHIEGPFLNPKRKGIHDAGKFRVIDDEALALLTSLKRGKTLVTLAPERTTPQIIRRL 182 +LG+H+EGPFL P RKGIHDA FR+ D +A + RG ++TLAPER + IR+L Sbjct: 129 ILGIHLEGPFLAPARKGIHDANLFRLPDAADIADIARKHRGVVMMTLAPERVPLETIRQL 188 Query: 183 ADAGVIVAAGHTNALYATMRQALEHGLTGFTHLFNAMSPLTSREPGAVGAALESPDAWCG 242 + AGVIV AGHT A YATMR AL+ G++GFTHL+NAM+PL SR+PG VGAAL+ P +WCG Sbjct: 189 SAAGVIVVAGHTAADYATMRAALDAGVSGFTHLYNAMTPLGSRDPGVVGAALDDPHSWCG 248 Query: 243 IIVDGRHVDPVVLKIALRTRALDRFMLVTDAMPTVGLPDKRFNLQGRDIRVVDGVCVDDH 302 +IVD HV P L++A+ +A + +LVTDAMP VG D + L G+ I DGVC D Sbjct: 249 LIVDLHHVHPASLRVAIAAKARGKSVLVTDAMPPVGADDPTYVLNGQTIVARDGVCQSDD 308 Query: 303 GTLAGSDLDMIGAVRNAIDLLDLSLDDAVMMASHAPASFLGLGHGRGLIAPGYAADLCLL 362 G LAGS LDM VR+ ++ + L L +A MAS PA++LGL G I G AD +L Sbjct: 309 GVLAGSALDMATGVRHLVNAVGLPLAEASRMASAYPAAWLGLERELGRIVAGQRADFAVL 368 Query: 363 NDRLEVAATWIDG 375 +D L V TWI G Sbjct: 369 DDALVVQETWIGG 381 Lambda K H 0.321 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 525 Number of extensions: 25 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 378 Length of database: 386 Length adjustment: 30 Effective length of query: 348 Effective length of database: 356 Effective search space: 123888 Effective search space used: 123888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate N515DRAFT_0589 N515DRAFT_0589 (N-acetylglucosamine-6-phosphate deacetylase)
to HMM TIGR00221 (nagA: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25))
../bin/blast/fastacmd -i /tmp/list.1567.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1567.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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