Align phosphogluconate dehydratase (EC 4.2.1.12) (characterized)
to candidate N515DRAFT_3177 N515DRAFT_3177 6-phosphogluconate dehydratase
Query= BRENDA::Q1PAG1 (608 letters) >FitnessBrowser__Dyella79:N515DRAFT_3177 Length = 606 Score = 749 bits (1934), Expect = 0.0 Identities = 376/599 (62%), Positives = 455/599 (75%), Gaps = 2/599 (0%) Query: 1 MHPRVLEVTERLVARSRATREAYLALIRGAASDGPQRGKLQCANFAHGVAGCGSEDKHSL 60 +HP V EVT RL RSR TR AYLA I A + G R +L C N AHG A CG DK +L Sbjct: 5 LHPVVAEVTARLRERSRDTRAAYLARIAAAGTGGTHRERLSCGNLAHGFAACGPHDKAAL 64 Query: 61 RMMNAANVAIVSSYNDMLSAHQPYEHFPEQIKKALREMGSVGQFAGGTPAMCDGVTQGEA 120 R + N+ IV+SYNDMLSAHQPYE +PE I++ RE G Q AGG PAMCDGVTQG Sbjct: 65 REGHTPNLGIVTSYNDMLSAHQPYERYPELIRRIARESGITAQVAGGVPAMCDGVTQGRE 124 Query: 121 GMELSLPSREVIALSTAVALSHNMFDAALMLGICDKIVPGLMMGALRFGHLPTIFVPGGP 180 GMELSL SR++IA++TAV+LSH+MFD L LGICDKIVPGL++GAL FGHLP IFVPGGP Sbjct: 125 GMELSLFSRDLIAMATAVSLSHDMFDGTLYLGICDKIVPGLLIGALSFGHLPGIFVPGGP 184 Query: 181 MPSGISNKEKADVRQRYAEGKATREELLESEMKSYHSPGTCTFYGTANTNQLLMEVMGLH 240 MPSGI+N++K+ VRQ YAEGKA R ELLE+E +YH+PGTCTFYGTAN+NQ+LME+MGLH Sbjct: 185 MPSGITNEQKSKVRQAYAEGKANRAELLEAEAAAYHAPGTCTFYGTANSNQMLMEIMGLH 244 Query: 241 LPGASFVNPYTPLRDALTHEAAQQVTRLTKQSGNFTPIGEIVDERSLVNSIVALHATGGS 300 LPGASFV P TPLRDALT EA +V L+ N PIG IVDER+++N ++ LHATGGS Sbjct: 245 LPGASFVAPDTPLRDALTAEAVHRVAALSAHGDNHLPIGHIVDERAIINGVIGLHATGGS 304 Query: 301 TNHTLHMPAIAQAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMAFLIREL 360 TNH LH+ A+A+AAGIQL W D LS VVP L+ VYPNG AD+N F AGGMAFLI +L Sbjct: 305 TNHLLHLVAMARAAGIQLRWDDFDALSSVVPLLARVYPNGYADVNQFHDAGGMAFLIDQL 364 Query: 361 LEAGLLHEDVNTVAGRGLSRYTQEPFLD-NGKLVWRDGPIESLDENILRPVARAFSPEGG 419 L AGLLH DV TV G GL Y Q P LD +G L W ES + +LR +A F +GG Sbjct: 365 LGAGLLHGDVRTVFGTGLDGYAQVPSLDASGALQWTPVAKESGNRGVLRGMAEPFRADGG 424 Query: 420 LRVMEGNLGRGVMKVSAVALQHQIVEAPAVVFQDQQDLADAFKAGELEKDFVAVMRFQGP 479 LR++ GNLGR V+KVS+V Q++EAPAVVF DQ ++ AF+ GEL +DF+AV+RFQGP Sbjct: 425 LRMLAGNLGRAVIKVSSVPDDRQVIEAPAVVFHDQDEVRKAFERGELNRDFIAVVRFQGP 484 Query: 480 RSNGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVSPEAQVGGALARVR 539 R+ GMPELHK+TP L VLQDRG+++AL+TDGRMSGASG++PAAIHV+PEAQ GA+AR+R Sbjct: 485 RAIGMPELHKLTPTLAVLQDRGYRIALLTDGRMSGASGRVPAAIHVTPEAQAQGAIARIR 544 Query: 540 DGDIIRVDGVKGTLELKVDADEFAAREPAKG-LLGNNVGSGRELFGFMRMAFSSAEQGA 597 DGD+IR+D +GTL++ VDA EFA+R PA L ++ G GRELFG R A + A+ GA Sbjct: 545 DGDLIRLDATRGTLDVLVDASEFASRAPATADLSSHHSGMGRELFGLFRQAAAEADLGA 603 Lambda K H 0.318 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1137 Number of extensions: 60 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 608 Length of database: 606 Length adjustment: 37 Effective length of query: 571 Effective length of database: 569 Effective search space: 324899 Effective search space used: 324899 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate N515DRAFT_3177 N515DRAFT_3177 (6-phosphogluconate dehydratase)
to HMM TIGR01196 (edd: phosphogluconate dehydratase (EC 4.2.1.12))
../bin/blast/fastacmd -i /tmp/list.13210.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13210.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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