Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate N515DRAFT_1376 N515DRAFT_1376 triosephosphate isomerase
Query= BRENDA::P0A858 (255 letters) >FitnessBrowser__Dyella79:N515DRAFT_1376 Length = 249 Score = 253 bits (646), Expect = 3e-72 Identities = 136/250 (54%), Positives = 170/250 (68%), Gaps = 3/250 (1%) Query: 1 MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIM 60 MR LV GNWK++GSR M L S++ + A + PP YI + GS + Sbjct: 1 MRKKLVAGNWKMHGSRSMAAALASDIAAGMP--ASVDAVVFPPFPYIAELAAQHAGSGLG 58 Query: 61 LGAQNVDLNLS-GAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQ 119 G Q+V + GA+TGE SA+ML+D+GAQ+ ++GHSERR YH ESDEL+A+KFA + Sbjct: 59 FGGQDVSEHEGQGAYTGEVSASMLQDVGAQWTLVGHSERRQYHHESDELVARKFAAARAG 118 Query: 120 GLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSAT 179 GLTPVLC+GET A+ EAG+TE V ARQ+ AVL G A+F+ AVIAYEPVWAIGTG++AT Sbjct: 119 GLTPVLCVGETLAQREAGETEAVIARQLLAVLALNGVASFDTAVIAYEPVWAIGTGRTAT 178 Query: 180 PAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKA 239 P QAQ VH FIR +A+ DA IA + YGGSV +NAAELFAQ D+DG LVGGA L + Sbjct: 179 PEQAQQVHGFIRSQLAREDAMIARLTRLLYGGSVKPANAAELFAQADVDGGLVGGACLTS 238 Query: 240 DAFAVIVKAA 249 F I AA Sbjct: 239 ADFLAICAAA 248 Lambda K H 0.316 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 196 Number of extensions: 5 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 249 Length adjustment: 24 Effective length of query: 231 Effective length of database: 225 Effective search space: 51975 Effective search space used: 51975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate N515DRAFT_1376 N515DRAFT_1376 (triosephosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.18393.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18393.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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