Align Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of 2-oxoglutarate dehydrogenase complex; EC 1.8.1.4 (characterized)
to candidate N515DRAFT_2778 N515DRAFT_2778 dihydrolipoamide dehydrogenase
Query= SwissProt::P14218 (478 letters) >FitnessBrowser__Dyella79:N515DRAFT_2778 Length = 474 Score = 568 bits (1465), Expect = e-166 Identities = 293/474 (61%), Positives = 348/474 (73%) Query: 1 MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKAL 60 MS KFDV+VIGAGP GYVAAIRAAQLGLKTACI+ + GK+GK ALGGTCLNVGCIPSKAL Sbjct: 1 MSDKFDVIVIGAGPAGYVAAIRAAQLGLKTACIDAFTGKDGKQALGGTCLNVGCIPSKAL 60 Query: 61 LDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEG 120 LDSS ++H F VHGI A IDV + RK IVK TGGI LFKAN VT+F G Sbjct: 61 LDSSKQFHNLTHNFAVHGITADNAKIDVATFIGRKDKIVKQFTGGIGQLFKANKVTAFYG 120 Query: 121 HGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGALEFQAV 180 GKLL VE+T DG Q + A NVI+ASGS P+E+P A + IVD+ GAL+F V Sbjct: 121 TGKLLKGNSVEITANDGSKQTISATNVILASGSVPIELPFAKFDNKFIVDNAGALDFPEV 180 Query: 181 PKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIR 240 PK+LGVIGAGVIGLELGSVW RLGA+VT+LEAL FL AD +AK A K KQGL I+ Sbjct: 181 PKRLGVIGAGVIGLELGSVWGRLGADVTILEALPDFLSVADADVAKIAAKEFAKQGLKIK 240 Query: 241 LGARVTASEVKKKQVTVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDERGF 300 LGA++T +E+K +V +T+ D +G + T DKL+VAVGRR T LLA D+GV LDERG Sbjct: 241 LGAKLTKAEIKGNEVALTYEDKDGAHELTVDKLLVAVGRRAYTAGLLADDTGVKLDERGR 300 Query: 301 IYVDDHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERIAGHKAQMNYDLIPSVIYTH 360 I VD+H T V GV+AIGD VRG MLAHK SEEGV VAE IAG +N+D IP VIYT Sbjct: 301 IVVDEHNHTGVDGVWAIGDAVRGPMLAHKGSEEGVAVAEWIAGKAGHVNFDTIPWVIYTE 360 Query: 361 PEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIADAKTDRVLGVHVI 420 PEIAW GKTE+ LK G+ VGTFPFAA GRA+A N+ G VK++A A+TDR+LGVH++ Sbjct: 361 PEIAWAGKTEKELKDAGIPYKVGTFPFAAIGRAVAMNEAVGQVKMLAHAETDRLLGVHMV 420 Query: 421 GPSAAELVQQGAIGMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGHAIHIAN 474 GP +EL+ + + MEF SAEDL +V +HPTLSEA+HEAAL+V+ AIH N Sbjct: 421 GPGVSELIAEAVVTMEFKGSAEDLARIVHAHPTLSEAVHEAALSVDKRAIHKGN 474 Lambda K H 0.316 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 667 Number of extensions: 25 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 478 Length of database: 474 Length adjustment: 33 Effective length of query: 445 Effective length of database: 441 Effective search space: 196245 Effective search space used: 196245 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate N515DRAFT_2778 N515DRAFT_2778 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.5581.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5581.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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