Align 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (characterized)
to candidate N515DRAFT_0360 N515DRAFT_0360 4-hydroxyphenylpyruvate dioxygenase
Query= BRENDA::Q09PG8 (367 letters) >FitnessBrowser__Dyella79:N515DRAFT_0360 Length = 364 Score = 530 bits (1364), Expect = e-155 Identities = 257/354 (72%), Positives = 293/354 (82%), Gaps = 2/354 (0%) Query: 16 VATFENPMGIDGFEFVEFASPEPE--KLHELFRNLGFVQVARHKTRPIYNYRQNDCTFLI 73 V TFENPMGIDGFEFVEFA+P +LHELF ++GF V +HK RPI YRQ FL+ Sbjct: 11 VTTFENPMGIDGFEFVEFAAPAGRGAELHELFGSMGFTAVLKHKRRPITVYRQGGVNFLV 70 Query: 74 NEDPDSFAADFARVHGPSACGFAIRVNKLAEWVRVQALKNGAKSIADKETSKAVAAPVIE 133 NEDPDSFAA+FA HGP A GFAIR + A V + L NG +++ DKE SKAV APV++ Sbjct: 71 NEDPDSFAAEFAAQHGPCAAGFAIRFKQPAAEVYAKVLANGGEAVGDKEASKAVDAPVVK 130 Query: 134 GIGGCMLYIVDRYDDKGTIHDPDWEWLPGAQMMPKGFGLTFIDHLTHNVYFGNMSKWADY 193 GIG CMLY+VDRY DKG+I+D D+ +PG + P GFGLTFIDHLTHN+YFGNM KW+DY Sbjct: 131 GIGDCMLYLVDRYGDKGSIYDGDYAPIPGVEQNPAGFGLTFIDHLTHNLYFGNMQKWSDY 190 Query: 194 YERLFQFREIRYFDIKGAKTGLLSKAMTAPDGMVRIPLNESPDPKSQINEYLDQYRGEGI 253 YERLF FREIRYFDIKGAKTGL+SKAMTAPDG+VRIPLNES DPKSQINEYLD Y GEGI Sbjct: 191 YERLFNFREIRYFDIKGAKTGLVSKAMTAPDGIVRIPLNESSDPKSQINEYLDAYHGEGI 250 Query: 254 QHIACFTDDIYATVEAMRAHGIEFLDTPNAYYAVIDERIPNHGEDVARMKESRILIDADP 313 QHIACFTD+IY TVEAMRA G+ FLDTP+ Y+ VID RIPNHGEDV R+ ++ILIDADP Sbjct: 251 QHIACFTDNIYETVEAMRAKGVSFLDTPDTYFDVIDLRIPNHGEDVPRLARNKILIDADP 310 Query: 314 ETKKKLLLQIFTKNCVGPIFFEIIQRKGNTGFGEGNFQALFESIEREQMARGVL 367 ETK++ LLQIFT+N +GPIFFEIIQRKGN GFGEGNFQALFESIER+QM RGVL Sbjct: 311 ETKQRKLLQIFTQNNIGPIFFEIIQRKGNEGFGEGNFQALFESIERDQMRRGVL 364 Lambda K H 0.321 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 616 Number of extensions: 28 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 367 Length of database: 364 Length adjustment: 30 Effective length of query: 337 Effective length of database: 334 Effective search space: 112558 Effective search space used: 112558 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 49 (23.5 bits)
Align candidate N515DRAFT_0360 N515DRAFT_0360 (4-hydroxyphenylpyruvate dioxygenase)
to HMM TIGR01263 (hppD: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27))
../bin/blast/fastacmd -i /tmp/list.18583.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18583.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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