Align 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (characterized)
to candidate N515DRAFT_0037 N515DRAFT_0037 2-amino-3-ketobutyrate coenzyme A ligase
Query= reanno::Cup4G11:RR42_RS28295 (400 letters) >FitnessBrowser__Dyella79:N515DRAFT_0037 Length = 400 Score = 512 bits (1319), Expect = e-150 Identities = 251/397 (63%), Positives = 307/397 (77%), Gaps = 3/397 (0%) Query: 3 TTDAFYAAIRQELESIEQAGLFKTERVIASPQGSLIRTTDGKEVINLCANNYLGLSSHPE 62 TT A YAA EL+SI + GLFK ERVI SPQ + I G+ V+N CANNYLGL+ HP+ Sbjct: 6 TTQARYAA---ELDSIREQGLFKAERVIVSPQSAQIELEGGRRVLNFCANNYLGLADHPQ 62 Query: 63 VVEAAHRALGERGFGLSSVRFICGTQDLHKSLEARLASFLGTEDTILYGSAFDANGGLFE 122 V++AA AL GFG++SVRFICGTQDLHK LE ++A F GTEDTILY + FDANGGL+E Sbjct: 63 VIQAAKEALDSHGFGMASVRFICGTQDLHKQLEKKIAEFFGTEDTILYAACFDANGGLYE 122 Query: 123 TLLGSDDAVISDELNHASIIDGIRLCKAKRFRYKNNDLEDLREQLKAADAAGARFKLVFT 182 LLG +DA+ISD LNHASIIDGIRLCKA+RFRY N D+ DL +QL+AADAAGAR KL+ T Sbjct: 123 PLLGEEDAIISDALNHASIIDGIRLCKARRFRYANCDMADLEQQLQAADAAGARTKLITT 182 Query: 183 DGVFSMDGTIARLDEIREICDEFGALLGIDECHATGFLGQRGRGSHEHRGIFGKVDIITG 242 DG FSMDG IA LD+I + ++ A++ IDECH TGFLG GRGS E G+ K+DI TG Sbjct: 183 DGAFSMDGFIAPLDKIAALAAKYNAMVHIDECHCTGFLGASGRGSAEVNGVMDKIDIFTG 242 Query: 243 TLGKALGGASGGFTSGRKEVVALLRQRSRPYLFSNTVAPCIVGATLKVLDLLEADTTLRD 302 TLGKALGGA GGFT+GR EV+ LLRQRSRPYLFSN++ P +V A LKV D+L + LR Sbjct: 243 TLGKALGGALGGFTTGRAEVIELLRQRSRPYLFSNSLPPHVVAAALKVFDMLSSAGELRQ 302 Query: 303 KLERNARYFRGKLGTLGFDVKPGDHPIIPVMVYDAEKAQRLSRRLLELGVYVIGFFYPVV 362 +++ N RYFR ++ GFD+KPG HPI+PVM+YDA+KAQ ++ RLL+ G+YV GFFYPVV Sbjct: 303 RVQENTRYFREQMTQAGFDIKPGVHPIVPVMIYDAKKAQAMATRLLDEGIYVTGFFYPVV 362 Query: 363 PRGQARIRVQISALHDSAELDQALEAFEIAGKELGII 399 P+GQARIR Q+SA H LD+A+ AF G+ELG+I Sbjct: 363 PQGQARIRTQMSAAHTREHLDRAIAAFTKVGRELGVI 399 Lambda K H 0.321 0.140 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 527 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 400 Length adjustment: 31 Effective length of query: 369 Effective length of database: 369 Effective search space: 136161 Effective search space used: 136161 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate N515DRAFT_0037 N515DRAFT_0037 (2-amino-3-ketobutyrate coenzyme A ligase)
to HMM TIGR01822 (kbl: glycine C-acetyltransferase (EC 2.3.1.29))
../bin/blast/fastacmd -i /tmp/list.548.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.548.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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