Align Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (characterized)
to candidate N515DRAFT_0361 N515DRAFT_0361 homogentisate 1,2-dioxygenase
Query= reanno::Cup4G11:RR42_RS31275 (449 letters) >FitnessBrowser__Dyella79:N515DRAFT_0361 Length = 430 Score = 652 bits (1682), Expect = 0.0 Identities = 302/425 (71%), Positives = 345/425 (81%) Query: 20 TPGYQSGFANEFATEALPGALPVGQNSPQRAPYGLYAEQISGTAFTAPRAHNRRSWCYRI 79 T GYQSGF NEFATEA+ G LP GQNSPQR +GLYAEQ+SG+AFTAPR NRRSW YRI Sbjct: 3 TKGYQSGFGNEFATEAVAGVLPHGQNSPQRVAHGLYAEQLSGSAFTAPRHSNRRSWLYRI 62 Query: 80 RAAAMHEPFTRVEQSRIVSHFDAVPPSPNQMRWSPPAMPKEPTDFVDGIITMAGNGGPEA 139 R AA+H PF + FD P +PNQ+RW P +P PTDFVDG++T+AGNGGP Sbjct: 63 RPAAVHRPFEPRAHEHFHNRFDEAPATPNQLRWDPWPLPARPTDFVDGLVTLAGNGGPAE 122 Query: 140 MSGCGIHLYLANRSMTDRFFYNADGEMLIVPQQGRLRLATEMGLLDVEPQEIVVIPRGVR 199 +GCGIH+Y ANRSM RFFY+ADGE+L+VPQQGRLR+ TE+G+LDV P EI VIPRGVR Sbjct: 123 QAGCGIHIYAANRSMLGRFFYDADGELLLVPQQGRLRVCTELGVLDVAPLEIAVIPRGVR 182 Query: 200 FRVELPDGEARGYICENYGALFRLPDLGVIGSNGLANPRDFLTPHAWYEDREGDFELVAK 259 FRVEL DGEARGY+CEN+GAL RLPDLG IG+N +A PRDFLTP AWYED EGDFEL+AK Sbjct: 183 FRVELIDGEARGYVCENFGALLRLPDLGPIGANSMALPRDFLTPQAWYEDVEGDFELIAK 242 Query: 260 FQGNLWRAAIGHSPLDVVAWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFLVLQSPSDTP 319 FQG+LW AAI HSPLDVVAWHGNYAPYKYDL +NT+GSIS DHPDPSIF VL SPSDTP Sbjct: 243 FQGSLWTAAIDHSPLDVVAWHGNYAPYKYDLTTYNTVGSISVDHPDPSIFTVLTSPSDTP 302 Query: 320 GVDSIDFVIFGPRWLAMQNTFRPPWFHRNIASEFMGLIEGVYDAKADGFSPGGASLHNCM 379 G ++DFVIF PRWL ++TFRPP+FHRN+ASEFMGLI+G YDAK GF PGGASLHNCM Sbjct: 303 GTANVDFVIFPPRWLVAEHTFRPPYFHRNVASEFMGLIQGAYDAKEGGFVPGGASLHNCM 362 Query: 380 SGHGPDAETFAKATAADTSQPHRIGDTMAFMFETPAVIRPTPYAAESAQLQDDYYRCWQG 439 SGHGPDA +F KA+ AD S+P + TMAFMFET VIRPT A ++ QLQ YY CWQG Sbjct: 363 SGHGPDAASFEKASGADVSKPDHLTGTMAFMFETRKVIRPTRQALDAPQLQGSYYECWQG 422 Query: 440 LKKHF 444 ++KHF Sbjct: 423 IRKHF 427 Lambda K H 0.320 0.138 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 803 Number of extensions: 27 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 449 Length of database: 430 Length adjustment: 32 Effective length of query: 417 Effective length of database: 398 Effective search space: 165966 Effective search space used: 165966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate N515DRAFT_0361 N515DRAFT_0361 (homogentisate 1,2-dioxygenase)
to HMM TIGR01015 (hmgA: homogentisate 1,2-dioxygenase (EC 1.13.11.5))
../bin/blast/fastacmd -i /tmp/list.23699.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23699.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.