Align xylulokinase; EC 2.7.1.17 (characterized)
to candidate N515DRAFT_3230 N515DRAFT_3230 xylulokinase
Query= CharProtDB::CH_003784 (484 letters) >FitnessBrowser__Dyella79:N515DRAFT_3230 Length = 490 Score = 561 bits (1445), Expect = e-164 Identities = 290/491 (59%), Positives = 348/491 (70%), Gaps = 11/491 (2%) Query: 1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKAL- 59 M++G+DLGTS VK +L++ G V A ++ LTVS P P WSEQDP WW+A A+ L Sbjct: 1 MFLGLDLGTSAVKAVLVDAAGAVRAVASQPLTVSHPRPRWSEQDPVDWWRAAVAAIDELL 60 Query: 60 ----GDQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQS 115 D V A+G++GQMHGATLLD RVLRPAILWNDGR +C +E +P Sbjct: 61 QAAARDGIPASRVAAIGLSGQMHGATLLDRSDRVLRPAILWNDGRSDAQCRWMET-LPDF 119 Query: 116 RVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFASDMSDAAGTM 175 ITGNL MPGFTAPKL WV+ HEP +F + KVLLPKDYLRL +TG++ASD+SDAAGT+ Sbjct: 120 HAITGNLAMPGFTAPKLAWVREHEPSVFDAVAKVLLPKDYLRLCLTGDYASDVSDAAGTL 179 Query: 176 WLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNA 235 WLDV KR WSD ML AC LSR+QMP ++EGSE G L E+A+ WGMA VPV AGGGDNA Sbjct: 180 WLDVGKRQWSDPMLAACGLSREQMPGVHEGSESAGRLRAELAERWGMARVPVAAGGGDNA 239 Query: 236 AGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAA 295 AGAVG G+V QAMLSLGTSGVYFAVS+GFLS+PE AVHSFCHALP WHLMSVML+AA Sbjct: 240 AGAVGAGIVRHGQAMLSLGTSGVYFAVSDGFLSRPEQAVHSFCHALPGTWHLMSVMLNAA 299 Query: 296 SCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQ 355 SCLD+ A+LTG ++V A++A AQ A + FLPYL+GERTPHN+ A G F GL Sbjct: 300 SCLDYTARLTGHADVGAMLAEAQAAPRRDDGPLFLPYLTGERTPHNDVHATGSFTGLQAD 359 Query: 356 HGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLD 415 +LA A LEGVG L DG++ V A G++ V +IGGG RS YW QMLADI+G+ L+ Sbjct: 360 TTRADLANATLEGVGLGLLDGIEAVDAAGLRADRVAVIGGGTRSAYWLQMLADIAGRPLE 419 Query: 416 YRTGGDVGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAY----QPR-RE 470 R GGDVG ALGAARLA +AA P + E+ PL +LPDA R+A Y QPR R+ Sbjct: 420 LRAGGDVGAALGAARLAHLAAEPGARIDEVCAMPPLVSEYLPDAARHAYYREHRQPRFRD 479 Query: 471 TFRRLYQQLLP 481 T+RRL P Sbjct: 480 TYRRLRTATTP 490 Lambda K H 0.319 0.134 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 677 Number of extensions: 26 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 484 Length of database: 490 Length adjustment: 34 Effective length of query: 450 Effective length of database: 456 Effective search space: 205200 Effective search space used: 205200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate N515DRAFT_3230 N515DRAFT_3230 (xylulokinase)
to HMM TIGR01312 (xylB: xylulokinase (EC 2.7.1.17))
../bin/blast/fastacmd -i /tmp/list.20251.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20251.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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