Align 3-oxoadipyl-CoA thiolase; EC 2.3.1.174 (characterized, see rationale)
to candidate HSERO_RS19990 HSERO_RS19990 acetyl-CoA acetyltransferase
Query= uniprot:B2SYZ2 (400 letters) >FitnessBrowser__HerbieS:HSERO_RS19990 Length = 400 Score = 647 bits (1669), Expect = 0.0 Identities = 321/400 (80%), Positives = 360/400 (90%) Query: 1 MNDAFICDAIRTPIGRYGGALKDVRADDLGAVPIKALIERNPGVDWRTVDDVIYGCANQA 60 M D FICDAIRTPIGRYGGALKDVRADDLGAVP++AL+ERNP VDW+ VDDVIYGCANQA Sbjct: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQA 60 Query: 61 GEDNRNVARMSALLAGLPVEAPGSTINRLCGSGMDAVGTAARAIKAGEARLMIAGGVESM 120 GEDNRNVARMS LLAGLP E PGSTINRLCGSGMDA+GTAARAIK+GE +LMIAGGVESM Sbjct: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 Query: 121 TRAPFVMGKATSAFARQADIYDTTIGWRFINPLMKRQYGVDSMPETAENVAAEFSVSRAD 180 TRAPFVMGKA SAF+RQA I DTTIGWRF+N LMK++YGVD+MPETAENVA +F VSRAD Sbjct: 121 TRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRAD 180 Query: 181 QDAFALASQQKAARAQQDGTLAQEIVGVEIAQKKGDPVRALLDEHPRETSLESLGKLKGV 240 QD FA+ SQ KAA AQ +GTLAQEIV V I QKKGDP+ DEHPR TS+E+L +LKGV Sbjct: 181 QDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLKGV 240 Query: 241 VRPDGSVTAGNASGVNDGACALLLANQQAADQYGLRRRARVVGMATAGVEPRIMGIGPAP 300 V+PDGSVTAGNASGVNDGACALLLA+ +A ++Y L+ RAR++GMATAGV PRIMG+GPAP Sbjct: 241 VKPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPAP 300 Query: 301 ATQKLLKQLGMTLEQLDVIELNEAFASQGLAVLRTLGLRDDDPRVNPNGGAIALGHPLGA 360 A++K+L QLGMT++Q+DVIELNEAFASQGLAVLR LG+ DDD RVNPNGGAIALGHPLG Sbjct: 301 ASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGM 360 Query: 361 SGARLITTALYQLERTNGRFALCTMCIGVGQGIALVIERL 400 SGARL+TTA YQLERT GR+ALCTMCIGVGQGIA+VIER+ Sbjct: 361 SGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIERV 400 Lambda K H 0.318 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 598 Number of extensions: 13 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 400 Length adjustment: 31 Effective length of query: 369 Effective length of database: 369 Effective search space: 136161 Effective search space used: 136161 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate HSERO_RS19990 HSERO_RS19990 (acetyl-CoA acetyltransferase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))
../bin/blast/fastacmd -i /tmp/list.5619.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5619.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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