Align 3-oxoadipate enol-lactonase (EC 3.1.1.24) (characterized)
to candidate HSERO_RS19935 HSERO_RS19935 hydrolase
Query= BRENDA::Q13KT2 (263 letters) >FitnessBrowser__HerbieS:HSERO_RS19935 Length = 420 Score = 154 bits (388), Expect = 4e-42 Identities = 93/254 (36%), Positives = 126/254 (49%), Gaps = 5/254 (1%) Query: 11 LHYRIDGERHGNAP--WIVLSNSLGTDLSMWAPQVAALSKHFRVLRYDTRGHGHSEAPKG 68 LHY + R+G AP +VLS++LGTDL MW L+ RV+ YD RGHG SE G Sbjct: 164 LHYTVREPRNGKAPRHTVVLSHALGTDLMMWDGLANQLAADCRVIAYDHRGHGSSEKADG 223 Query: 69 PYTIEQLTGDVLGLMDTLKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARI-- 126 Y++ L D L+ L + GLSMGG+ G LA RH + + L NT + Sbjct: 224 LYSMADLADDAARLLRELDSGPVVWVGLSMGGMVGQELALRHPGLVRALVLANTTSAYPD 283 Query: 127 GSPEVWVPRAVKARTEGMHALADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASN 186 + E W R R EG+ +ADAV+ R+F + + +A R V TD GY Sbjct: 284 AAREAWQQRIATVRAEGIEVIADAVMGRYFHEGFRSAQAATVARYRQRLVTTDAVGYVGC 343 Query: 187 CEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQGRELAQAIAGARY-VELDASHISNI 245 C A+ D I+VP LVI+G D A + L I+GAR V ASH+S + Sbjct: 344 CHAVGTVDTAARLGSIRVPTLVIAGELDQGTPVAMAQALVDGISGARLAVIAGASHVSAV 403 Query: 246 ERADAFTKTVVDFL 259 E+ F + V F+ Sbjct: 404 EQPALFAELVCGFI 417 Lambda K H 0.320 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 293 Number of extensions: 18 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 263 Length of database: 420 Length adjustment: 28 Effective length of query: 235 Effective length of database: 392 Effective search space: 92120 Effective search space used: 92120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate HSERO_RS19935 HSERO_RS19935 (hydrolase)
to HMM TIGR02427 (pcaD: 3-oxoadipate enol-lactonase (EC 3.1.1.24))
../bin/blast/fastacmd -i /tmp/list.10010.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10010.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.